Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_021529.2 Length=247511 Score E Sequences producing significant alignments: (Bits) Value seq3187 141 1e-28 seq27239 86.0 1e-11 >seq3187 Length=10884 Score = 141 bits (156), Expect = 1e-28 Identities = 147/190 (77%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 63885 CACACTGG-TGTAATCCCATTCTGGAAACACTTTCAGACTGCTGTGAAGTCATGTTCACA 63943 ||||| || |||| ||| |||| || ||||| |||||||| || || || || || || Sbjct 7715 CACACAGGCTGTATTCCG-TTCTACAAGCACTTCCAGACTGCGGTTAAATCTTGCTCTCA 7657 Query 63944 AGGTGGTGTTCGTGGTGGTGCTGCAACGCTAACTTACCCGATTTGGCATTTAGAAGTTGA 64003 ||||||||| |||||||||||||| || || |||||| |||||||| | |||||||| Sbjct 7656 AGGTGGTGTCCGTGGTGGTGCTGCTACCTTATTTTACCCAATTTGGCACCTTGAAGTTGA 7597 Query 64004 AAAACTTTTGGTGCTGAAGAACAACAAAGGCGTTGAAGAAAACCGTATTCGTCATCTTGA 64063 || || || || ||||| |||||| || ||||||| ||||| |||| ||| | || Sbjct 7596 AAGCCTGTTAGTCCTGAAAAACAACCGCGGGGTTGAAGGTAACCGAGTTCGCCATATGGA 7537 Query 64064 CTACAGTGTG 64073 |||| ||||| Sbjct 7536 CTACGGTGTG 7527 Score = 89.7 bits (98), Expect = 8e-13 Identities = 139/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 65910 GTAAACGCGCTTGAAGCAATTCGTTTCTATGTTTCATTTGCATGTACTTTCAACTTTGCT 65969 || ||||| || |||||||| || || ||||| ||||| ||| | ||| || || Sbjct 5520 GTTAACGCACTGGAAGCAATCCGATTTTATGTCAGCTTTGCCTGTTCATTCGCATTCGCA 5461 Query 65970 GAACAAGGCATCATGGAAGGCAACGCGAAAGTAATGAAACTGATTGCACGTGATGAGCAG 66029 |||| | | |||||||| || || ||| | || || ||||||||||||||||| || Sbjct 5460 GAACGTGAGCTAATGGAAGGTAATGCTAAAATTATCAAGCTGATTGCACGTGATGA--AG 5403 Query 66030 CTT--CACTTGAAAGGCACACAAGCGTTAATCAATATCTGGCACTCTGGTAAAGATGATC 66087 ||| ||||| | |||||| ||| | | || | | | ||| | ||||||| | Sbjct 5402 CTTTACACTTAACAGGCACTCAACATATGTTGAACCTGTTACGCTCAGTCCAAGATGACC 5343 Query 66088 CAGAAATGGTAGAAATT 66104 | ||||||| ||||||| Sbjct 5342 CTGAAATGGCAGAAATT 5326 >seq27239 Length=2495 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 237494 TGTGAACATCACTTCGTGACAATTGATGGTAAAGCAACAGTTGCTTACATCCCTAACAAG 237553 || ||||| ||||| || || |||||||||||||| | ||| ||||| ||||| || | Sbjct 2403 TGCGAACACCACTTTGTCACTATTGATGGTAAAGCGATAGTGGCTTATATCCCAAAAGAC 2344 Query 237554 AAAGTTCTTGGCTTGTCTAAGATGAATCGCATTGTTGAGTATTTCAGTCGTCGCCCTCAA 237613 ||||| |||| | || || || || |||||||| | | |||| | ||||| ||| Sbjct 2343 AAAGTCATTGGGCTATCGAAAATCAACCGCATTGTGCAATTTTTCTCCCAGCGCCCGCAA 2284 Query 237614 GTGCAAGAGCGTTTAAC 237630 || || || ||||| || Sbjct 2283 GTTCAGGAACGTTTGAC 2267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 791578895072560