Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_021774.1 Length=29742 Score E Sequences producing significant alignments: (Bits) Value seq13268 127 4e-25 seq13683 120 6e-23 seq21062 80.6 5e-11 >seq13268 Length=3871 Score = 127 bits (140), Expect = 4e-25 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 21507 CCGCCTTTTAGTGGATTCAGAGCGACGGCATTTTGCAGATAGTCAGGCGCAAGGTGCGCA 21566 || || |||| |||||| | | | ||| ||||| ||| ||||| || | ||| ||| Sbjct 3049 CCCCCATTTAATGGATTTAAGGTAATAGCAAATTGCAAATAATCAGGGGCTAAGTGAGCA 3108 Query 21567 TAGGCCATCGTCTGCTGAATGCTCGCATGTCCCAGAATCTGTTGCAGTGCGATTATATTG 21626 || ||||| ||||| ||||| | || || || | || |||||||| || | |||||| Sbjct 3109 TAAGCCATTGTCTGTTGAATATTGGCGTGACCTAATATTTGTTGCAGAGCAACAATATTG 3168 Query 21627 CCCCCATTCATCATGAAATGGCTTGCGAATGTATGCCGCAGGATGTGGGTTGCCTGATTG 21686 || |||||||||||||| || |||||||| ||||||| || | ||| || || ||| | Sbjct 3169 CCACCATTCATCATGAAGTGACTTGCGAAAGTATGCCTAAGAACGTGCGTAGCTTGACCG 3228 Query 21687 GGTGGTATATCAGGTTTCAC 21706 ||| | ||||||||| || Sbjct 3229 TCTGGCAAATCAGGTTTAAC 3248 >seq13683 Length=3702 Score = 120 bits (132), Expect = 6e-23 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 11079 CACAAGGGGACTATCGGCGCAATCCGTCGGGTAGTGGAGCCACTCGGCTATGTCATCAAT 11138 ||||| || || || |||||| | ||||| || || |||||| | || ||| | || Sbjct 1295 CACAAAGGTACGATTGGCGCATTGCGTCGTGTGGTTGAGCCATTGGGTTATTTAATTCGG 1354 Query 11139 GTAACGGAATGGTGGGAAAGCGGCGACACGCCAGGCACATTCCGGCTTGATATCGGGGTG 11198 || | || |||||| ||| ||| || | ||||| || || ||||||||||||||| Sbjct 1355 GTTATTGAGTGGTGGAAAACTAACGAAACCGCCGGCACGTTTCGTCTTGATATCGGGGTG 1414 Query 11199 CTTGAAAGTGGCATTACCGAAGAAATGTATTTCGAAATGGAACGACTGATTGCGGATGCA 11258 ||||||| || ||||| |||||||||||| || | ||| | ||||| |||||| Sbjct 1415 CTTGAAACGGGTATTACTGAAGAAATGTATCAAGAGTTAGAAGCATTGATTTTTGATGCA 1474 Query 11259 AAACCAGCCAGTCGTCATCTGACTGGCCTGAATATT 11294 ||||| || || ||||| || | || || | |||| Sbjct 1475 AAACCGGCGAGCCGTCACCTTATCGGTCTCACTATT 1510 >seq21062 Length=2553 Score = 80.6 bits (88), Expect = 5e-11 Identities = 122/171 (71%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 21534 GCATTTTGCAGATAGTCAGGCGCAAGGTGCGCATAGGCCATCGTCTGCTG-AATGCTCGC 21592 |||| ||| ||| |||| || |||| ||| || |||| || || ||||| |||| | | Sbjct 1465 GCATCTTGAAGAAAGTCCGGTGCAAAGTGTGCGTAGGTCAGTGTTTGCTGTAATGTT-GA 1523 Query 21593 ATGTCCCAGAATCTGTTGCAGTGCGATTATATTGCCCCCATTCATCATGAAATGGCTTGC 21652 || || | ||| |||| | || ||| |||| ||||||||||| |||||| |||| Sbjct 1524 GTGACCTAAGATCCTCTGCAAAGTAATAATACTGCCTCCATTCATCATAAAATGGGTTGC 1583 Query 21653 GAATGTATGCCGCAGGATGTGGGTTGCCTGATTGGGTGGTATATCAGGTTT 21703 ||| |||||||| | ||| || || || |||| |||||||| || Sbjct 1584 GAAAGTATGCCGTAATGCGTGCGTGGCTTGGCCTTGTGGCATATCAGGCTT 1634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95015363811168