Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_021857.1 Length=41475 Score E Sequences producing significant alignments: (Bits) Value seq23044 246 8e-61 seq24858 163 8e-36 seq13007 116 1e-21 seq26734 109 1e-19 seq19828 104 6e-18 seq1477 100 8e-17 seq23797 95.1 3e-15 seq26221 91.5 4e-14 >seq23044 Length=7840 Score = 246 bits (272), Expect = 8e-61 Identities = 411/588 (70%), Gaps = 12/588 (2%) Strand=Plus/Plus Query 228 GTTTTTACGCCCATCAAAGGTGTTGAGCCACCGGAGTGGTTCGCTGAAGAAGATCTCCCT 287 || |||||||| | |||||||| | |||||| || |||||| |||| | || | Sbjct 513 GTATTTACGCCGCTAAAAGGTGTGGCGCCACCTGATTGGTTCACTGAGAACGAGTTAGAG 572 Query 288 CTCGCCACGATCATGTGGCAACTGACAACCAAAGAACTCTGCGGTCAGGGCCTGCTGTGC 347 || |||| |||||||| | || || | ||||||||||| || ||||| | | || Sbjct 573 CTTGCCATTGTCATGTGGGAGCTCACGATAAAAGAACTCTGTGGACAGGGTATTTTATGT 632 Query 348 GTGACTGACCTGGCGGTACTTGAGCGGTGGTGCGTGGCCTATGAGTTCTGGCGACGTGCC 407 | || ||||| || || |||||||| ||||| ||||||||| | | ||||| ||| Sbjct 633 ATTACCGACCTCGCTGTGCTTGAGCGCTGGTGTGTGGCCTATCATATTTGGCGTAATGCA 692 Query 408 GTGAAAAATAT--TGCCATACAGGGCAACAC-CATCACCGGTGCAATGGGCGGCATGGTC 464 || | |||| ||| | || | ||| | | | | ||||||| ||| ||| | Sbjct 693 GTCATTGATATCATGCGAGACGG---AACTCGCTTAATTGGTGCAACGGGTGGCCCAATA 749 Query 465 AAAAATCCGGAGCTGACCGCCAAAAAAGAACAGGAGTCCGAGATGAGCAGCACGGGTGCA 524 ||||| || || | || | |||||||| || || ||| ||| | || || ||| Sbjct 750 AAAAACCCTGACTTAACGACAAAAAAAGAGCAAGAAAGCGAAATGGATCGTACTGGCGCA 809 Query 525 ATGCTCGGACTCGACCCCAGCAGCCGCCAGCGTCTGATTGGCCTGGCGGGGCAGAAGAAA 584 ||| | || | || || ||||| |||||||| | |||||| |||| ||||| |||||| Sbjct 810 ATGTTGGGTTTAGATCCGAGCAGTCGCCAGCGGTTAATTGGCATGGCAGGGCAAAAGAAA 869 Query 585 GCCACTAACCCGTTTCTGAAAATCATCGAGTCATGAGCCGGAAATCTTACCCCAACGTAA 644 ||| || ||| ||| ||||| |||||||||| ||||||||||| ||||| | Sbjct 870 CAAGATAATCCATTTATGAGGATCATTTCATCATGAGCCGTAAATCTTACCCAAACGTCA 929 Query 645 ATGCTGCCAATCAGTATGCCCGTGATGTCGTGCGCGGAAAGATTGTGGCCTGCCAGTTTG 704 ||| || ||||| ||||| |||||||| || ||||| ||| |||| || || |||| || Sbjct 930 ATGTGGCAAATCAATATGCGCGTGATGTGGTTCGCGGCAAGGTTGTAGCGTGTCAGTATG 989 Query 705 TGATTCAGGCCTGCCAGCGCCATCTTGATGACCTGATGGCGGA--AAAAAGTAAGT-CGT 761 | ||| | || ||||| || || ||||||| ||||| | | |||| || | Sbjct 990 TCATTGATGCTTGCCAACGACACATTGATGA---TATGGCCCAAGAGAAAGGGCGTAAAT 1046 Query 762 TTCGTTACCGCTTCGACAAAGACCTGGCTGAACGGGCCGCGAAATTTA 809 | || || || || || |||||| |||| |||| ||||| || |||| Sbjct 1047 TCCGCTATCGATTTGATAAAGACTTGGCAGAACAAGCCGCTAAGTTTA 1094 Score = 215 bits (238), Expect = 1e-51 Identities = 305/429 (71%), Gaps = 0/429 (0%) Strand=Plus/Plus Query 1862 ACAGCCGAACGCTTTCAGAAATGGGTGGAAATGGGCGTTCTGACCGTTACCGATGGTGCA 1921 || || ||||| ||| ||||||||||||| ||| | ||| | || || ||||| Sbjct 2313 ACCGCAGAACGGTTTAGAAAATGGGTGGAAACAGGCCATTTGAAGCTAACTGACGGTGCC 2372 Query 1922 GAGGTGGATTATCGCTACATCCTCGAAGAGGCCAAAGCGGCGAACAAAATCAGCCCGGTC 1981 || | ||||||||| || | || || |||||||| | ||| | | |||| | Sbjct 2373 GAAATTGATTATCGCGTTATTTTAGAGGATGCCAAAGCAGATAACTTGAATAACCCGATT 2432 Query 1982 AGTGAGTCACCCATCGACCCTTTCGGAGCGACCGGGCTGTCACATGACCTTGCTGATGAA 2041 | ||| || || |||||| ||| || || | || || | || |||||||| Sbjct 2433 AATGAAAGCCCGATTGACCCTCACGGCGCAACAAACTTATCTCACCAACTGGCTGATGAG 2492 Query 2042 GACCTGAATCCCGTTACTATCGTCCAGAACTTCGCCAATATGTCCGACCCGATGAAAGAG 2101 | | || || | || || || || |||| | | |||||||| ||||||||||||||| Sbjct 2493 GGATTAAACCCTATCACCATTGTTCAAAACTACACGAATATGTCTGACCCGATGAAAGAG 2552 Query 2102 CTGGAGGCAGCGATTGAATCGGGACGCTTTCATCATGACGGCAATCCCATCATGACCTGG 2161 || || || ||||||| || || |||||||||||||| ||||| || |||||||| ||| Sbjct 2553 CTTGAAGCGGCGATTGCTTCAGGGCGCTTTCATCATGATGGCAACCCAATCATGACATGG 2612 Query 2162 TGTATCGGCAATGTGGTCGGCAAAAACATGCCAGGTAACGATGATTTAGTGAAGCCCGTC 2221 ||||| || |||||||| || ||| | | || |||||||||||| | || | ||| | Sbjct 2613 TGTATGGGGAATGTGGTGGGTAAATATTTACCGGGTAACGATGATGTCGTTAGGCCTATA 2672 Query 2222 AAAGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGA 2281 |||||||| ||||| ||||| || ||||| || ||| | |||||||| | || | Sbjct 2673 AAAGAGCAAAACGAAAATAAAATTGACGGTGCTGTCGCGTTAATTATGGCTATCGGACGG 2732 Query 2282 GCCATGCTG 2290 || |||||| Sbjct 2733 GCGATGCTG 2741 Score = 163 bits (180), Expect = 8e-36 Identities = 180/240 (75%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 1282 TACCACAATGCTTACCGGGATGGGGGCGCGACGTCAGCCACTGATGTGGGCCATCACCAC 1341 ||| || ||| | || ||||||||||| |||| ||||| |||||||||| || ||||| Sbjct 1633 TACAACCATGTTAACGGGGATGGGGGCAAGACGGCAGCCGTTGATGTGGGCTATTACCAC 1692 Query 1342 CGCCGGGTACAACATTGAGGGGCCGTGCTACGACAAACGGCGGGAAGTCATCGAGATGCT 1401 || || || ||||| || ||||| |||||||| || || || ||||| || |||||| | Sbjct 1693 AGCAGGTTATAACATCGAAGGGCCTTGCTACGATAAGCGTCGCGAAGTGATTGAGATGTT 1752 Query 1402 CAACGGCTCGGTGCCTAACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAGGTGA 1461 || || |||| || || || ||| | ||||| | ||||||||||| ||||| || || Sbjct 1753 GAATGGTACGGTTCCCAATGAGGAATTATTCGGTGTTATCTATACCGTGGATGAGGGCGA 1812 Query 1462 CGACTGGACCGACCCGCAGGTGCTGGAAAAAGCCAATCCAAATATTGGCGTGTCGGTTTA 1521 ||||||||| || || | |||| | ||||| || || || || || || || || || Sbjct 1813 CGACTGGACAGATCCTAACACGCTGAAGAAAGCTAACCCGAACATGGGGGTTTCAGTCTA 1872 Score = 154 bits (170), Expect = 4e-33 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 953 ACCGAAATCCCCCGTAAGAACGGCAAATCGGCAATCTCTGCCGGTGTCGCCCTGTATTGT 1012 ||||| ||||||||||| || || |||||||| || ||||| || ||||| | |||||| Sbjct 1294 ACCGAGATCCCCCGTAAAAATGGGAAATCGGCTATTTCTGCGGGGGTCGCATTATATTGT 1353 Query 1013 TTTGCCTGTGATAACGAGTTTGGCGCGGAAGTGTATTCCGGTGCCACGACAGAGAAACAG 1072 ||| | ||||||||||| ||||| || ||||| || || ||||| || || || || || Sbjct 1354 TTTACGTGTGATAACGAATTTGGTGCTGAAGTTTACTCGGGTGCAACAACCGAAAAGCAA 1413 Query 1073 GCGTGGGAAGTCTTTCGCCCGGCTCGACTGATGTGTAAACGCACACCCATGCTGACGGAA 1132 ||||||||||| || | || || | | ||||| || || ||||| | || || ||| Sbjct 1414 GCGTGGGAAGTGTTCAGGCCTGCAAAATTAATGTGCAAGCGTACACCGTTACTCACAGAA 1473 Query 1133 GCGTTCGGGATTGAGGTTAACGCCTCAAAC 1162 || || || ||||| || |||||| |||| Sbjct 1474 GCATTTGGTATTGAAGTGAACGCCAAAAAC 1503 >seq24858 Length=2428 Score = 163 bits (180), Expect = 8e-36 Identities = 246/344 (72%), Gaps = 17/344 (5%) Strand=Plus/Minus Query 40022 ttttttAATATTTCATTCTCCATTTCAATGCGTTGTAGCTTTTTCCTGAGCTCACGGATT 40081 ||||||| ||||| || |||||||||| |||||||| |||||| | | |||||| | | Sbjct 2411 TTTTTTAGGATTTCGTTTTCCATTTCAAGGCGTTGTATCTTTTTTTTCATCTCACGAAGT 2352 Query 40082 TCAATTTGTTCCGGGGTAATGGGGGAGGCTTTT-GGTGTTTTGCCCTGACGCTCATCACG 40140 ||||| || || || |||| | || || | | || ||||| || || ||||| || Sbjct 2351 TCAATCTGCTCGGGCGTAA-GCGGAAGCCCCGTCGGAGTTTTACCTTGTCGCTCTAATCG 2293 Query 40141 CAGTTGTTTGACCCATCTTGTCATTGTGGAAAG------GCCAACATC-----CATAGCT 40189 ||||| ||| ||||||| | | || || ||| ||| | || ||| || Sbjct 2292 CAGTTTTTTAACCCATCGATTAAGTGCGGCAAGACTCACGCCCANCTCACGCCCATTGCC 2233 Query 40190 TTGGCGGCATCTGCCACCGTGTATTTCTGGTCAACAACCAGTTGAGCGGATTCGCGTTTA 40249 | ||||| | || || | ||| | |||||||| |||| || ||||| |||| ||||| Sbjct 2232 TGTGCGGCTTTAGCTACGGAGTAATGATGGTCAACGACCATTTTAGCGGCTTCGAGTTTA 2173 Query 40250 AACTCTGCGCTAAAATTTCtttttttCATTGGAGCACCTGTGTTGTTCT-GAGGTGAGCA 40308 || ||||| || ||| ||| ||| | |||||||| |||| | ||||| || | Sbjct 2172 AATTCTGCTG-AATATTGCTTAAC--CATGTGCTCACCTGTGATGTTATTGAGGTAAGAA 2116 Query 40309 TATCACCTCTGTTCAGGTGGCCAAATTCAGTGTGCCACTTCAAG 40352 |||||||||| ||||||||||||||| | | |||||||||||| Sbjct 2115 TATCACCTCTAGTCAGGTGGCCAAATTAACTATGCCACTTCAAG 2072 >seq13007 Length=9541 Score = 116 bits (128), Expect = 1e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 24976 TGCATGTTCGGTAAGGTGATTAGGTGCGAGGTGAGCATATCGACGAACCATTTCGATAGA 25035 ||||||||| || || ||||| || || | |||||||| | | |||||||| || || Sbjct 9392 TGCATGTTCAGTTAGATGATTCGGCGCTAAATGAGCATACCTTCTCACCATTTCTATTGA 9451 Query 25036 CTCCCAGCCTCCCATTTCCTGTAACACTGACAACGGGACTCCGGCTTGAACCAGCCAACT 25095 ||||| ||||||||||| || | | || || || ||||||| ||||| |||||||| Sbjct 9452 TTCCCATCCTCCCATTTCTTGAAGTGCAGATAATGGAACTCCGGACTGAACAAGCCAACT 9511 Query 25096 TGCCCAGGTGTGTCTCAAGTCGTGAAATC 25124 ||||| || || |||||||| ||||||| Sbjct 9512 CGCCCAAGTATGCCTCAAGTCATGAAATC 9540 >seq26734 Length=1040 Score = 109 bits (120), Expect = 1e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 818 TTGCCACACACCAAGGGGGAGTGGGCATTCAAACGGATGCCCATCACGCTGGAGCCGTGG 877 || || ||||| ||||||||||||||||| ||||| || || || ||||| || |||||| Sbjct 5 TTACCCCACACAAAGGGGGAGTGGGCATTTAAACGAATTCCGATTACGCTCGAACCGTGG 64 Query 878 CAGCTCTTTGTGATCTGCTGCGCGTTTGGCTGGGTCAATAAAGGCTCCCGGCTGCGCCGC 937 || || ||| | | || || || ||||||||||| | ||||| | || | || Sbjct 65 CAACTTTTTATCGTTTGTTGTGCATTTGGCTGGGTGCAAAAAGGTACGAAACTTAGGCGA 124 Query 938 TTCCGTGAGGTGTATACCGAAATCCCCCGTAAGAA 972 || ||||| || || ||||| ||||||||||| || Sbjct 125 TTTCGTGAAGTTTACACCGAGATCCCCCGTAAAAA 159 Score = 100 bits (110), Expect = 8e-17 Identities = 159/223 (71%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 1575 CAAACGTCTTTAAAACAAAACACCTCAATATCTGGGTGTCGGCGCGTTCGGCGTATTTCA 1634 ||| | |||| ||||| || || | ||||||||||| || |||||||| |||||||||| Sbjct 809 CAAGCATCTTCAAAACTAAGCATTTAAATATCTGGGTTTCAGCGCGTTCAGCGTATTTCA 868 Query 1635 ACCTGGTGAGCTGGC-AGAGCTGCGAGGATAAATCACTGACTCTTGAGCAGTTCGAGGGG 1693 | || |||| |||| |||| || || |||||| | ||||| || || ||| || ||| Sbjct 869 ATATGTTGAGTTGGCGAGAG-TGTGAAGATAAAACCCTGACACTAGAAATGTTTGAAGGG 927 Query 1694 CAGCCGTGCATTCTGGCCTTTGACCTGGCGCGTAAGCTGGATATGAACAGCATGGCGCGA 1753 || | || ||| | | ||| |||| | ||| ||||||||||| || || | Sbjct 928 CAATCTTGTGTTCAATCTCTCGACTTGGCCAGAAAGTTGGATATGAAC-TCACGGGTTAA 986 Query 1754 CTT-TATACCCGCGAGATTGACGGTAAAACGCATTACTACAGT 1795 || | ||| ||||| ||||| || | |||||| ||| || Sbjct 987 ATTGTTTACGCGCGAAATTGATGGCAGGCGGCATTATTACTGT 1029 >seq19828 Length=1506 Score = 104 bits (114), Expect = 6e-18 Identities = 241/361 (67%), Gaps = 2/361 (1%) Strand=Plus/Minus Query 39280 CCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCAGTTTCC 39339 |||||| |||| | || | || || || ||||| || ||||||||||| || || Sbjct 977 CCATTCTGTCTTTAAGCTTCGAAAAAATCGCTCCATCGGCGCATTATCCCAGCAATTACC 918 Query 39340 GCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTGCCCGGAACTGCCTGC 39399 || || | ||| || | ||||| || ||||| | ||| || || | |||| || Sbjct 917 TCGTCGAGATAAACTTTGCTTTATCTGATAACGCCATAGTAATTG-ACGATATTGCCGGC 859 Query 39400 TCGTATAATGACTGCCCTGATCGCTGTGGAACATCACCCCGCCGGGCTTACCACGGGTTT 39459 | ||||||||||| || ||||| || |||| || | |||||||| | | || Sbjct 858 TTGTATAATGACTTCCTTGATCTGAATGAAACAGCATATTTCTTGGCTTACCTCTTGATT 799 Query 39460 CCCATGCCATTTCCAGCGCTTTCATGGTGAGCCTGCTGTCCGGCGAGAACGACATGGCCC 39519 | | |||||| | ||||| || || ||| || || || || |||| |||| Sbjct 798 CAAAAGCCATTGATAATGCTTTTCCCGTTAGTTGGCTATCGGGTGA-AAAGACACCGCCC 740 Query 39520 AGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCAGCGCTTAC 39579 | || || || |||| || || | || | ||||| || || || |||||| |||| Sbjct 739 AACCAACGGGCTTTCGAGCAAATAAATCCATCACAACCGCAAGATATATCCAGCGATTAC 680 Query 39580 CCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTCACGGCGAACT 39639 | | ||| ||||| || || ||||| ||| || || |||||||| || || || || | Sbjct 679 CTGACCAAATATACGTTACGTCACCTACCCAAACTTGGTTTGGCTCCGTGACTGCAAATT 620 Query 39640 G 39640 | Sbjct 619 G 619 Score = 87.8 bits (96), Expect = 5e-13 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 39101 TGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTTTCCAGTATCGATTTTCCGAT 39160 |||||||||||||||||| ||| ||||| |||||| ||| ||| ||| ||| ||| Sbjct 1211 TGAAGTGGTCAACAAAAATTGGTCACCGTTTTAGAGCTTTCCCAATATAATCGTTCTGAT 1152 Query 39161 TCGTTTGGGGGTAACCCACCGTTATATTCGTGCGGTCT 39198 || || || | ||| ||||||||||||| |||||||| Sbjct 1151 TCATTGGGCGTTAAGCCACCGTTATATTGATGCGGTCT 1114 >seq1477 Length=12152 Score = 100 bits (110), Expect = 8e-17 Identities = 187/275 (68%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 39101 TGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTTTCCAGTATCGATTTTCCGAT 39160 ||||||||||||| || | ||||||| ||||| | ||| | | | || ||| Sbjct 11876 TGAAGTGGTCAACTAATATTGGCCACTCTATTAGACTGTTTGTAAAACAGTCGCTCAGAT 11935 Query 39161 TCGTTTGGGGGTAACCCACCGTTATATTCGTGCGGTCTTAGTGCACTGTAATATCCCACG 39220 || ||||||| || || |||||||| ||| ||||| | |||||||||| ||| | Sbjct 11936 TCATTTGGGGTCAATCCCCCGTTATACCAGTGGGGTCTGATACCACTGTAATAACCCGTG 11995 Query 39221 ATATAGTCCGTTATGGCGTGAGCTGCCTCGCTGAAGCTTACGTAACCCACCACCGGCATC 39280 ||||| ||| | | |||| || | | || | ||||||| |||||| Sbjct 11996 ATATAACAAACAATGTTGAGTTCTGCTTCTTTCGGGGTTTCATAACCCATTGAAGGCATC 12055 Query 39281 CATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCAGTTTCCG 39340 || || | || | ||| || || || || |||||||||||||| ||||| ||||| || Sbjct 12056 CACTCATGTTTTAAACTTCTAAAAAATCGCTCCATTGGGCTGTTGTCCCAACAGTTACCT 12115 Query 39341 CGCCGGCTCATACTCTGTCTGATCTGGTATCGCCA 39375 || || |||| ||| || || || || ||||| Sbjct 12116 CGGCGACTCAGACTTTGCACAATTTGATAACGCCA 12150 >seq23797 Length=2989 Score = 95.1 bits (104), Expect = 3e-15 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 39101 TGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTTTCCAGTATCGATTTTCCGAT 39160 |||||||||||||||||| ||| ||||| |||||| ||| ||| ||| ||| ||| Sbjct 2883 TGAAGTGGTCAACAAAAATTGGTCACCGTTTTAGAGCTTTCCCAATATAATCGTTCTGAT 2824 Query 39161 TCGTTTGGGGGTAACCCACCGTTATATTCGTGCGGTCTTAGTGCACTGTAATATCCCACG 39220 || || || | ||| ||||||||||||| |||||||| | ||| ||||| || | | Sbjct 2823 TCATTGGGCGTTAAGCCACCGTTATATTGATGCGGTCTAATCTGACTATAATACCCAATG 2764 Query 39221 ATATA 39225 ||||| Sbjct 2763 ATATA 2759 >seq26221 Length=1580 Score = 91.5 bits (100), Expect = 4e-14 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 39543 AGGTCGAGAACAACGGCGAGGTACGCCCAGCGCTTACCCGTCCAGATATAGGTCACATCA 39602 ||||| | || || ||||| |||||||| || || || ||||| || || |||||||| Sbjct 176 AGGTCTAACACGACAGCGAGATACGCCCACCGTTTTCCTGTCCAAATGTACGTCACATCG 117 Query 39603 CCGCACCACACCTGATTTGGCTCGGTCACGGCGAACTGCCTTTCAAGGTAGTTAGGGATA 39662 ||||||||||| ||||| || | || || || || || | || || | ||||| || Sbjct 116 CCGCACCACACTTGATTGGGGGCAGTGACAGCAAATTGGCGGTCGAGTAAATTAGGAATG 57 Query 39663 GCAACATGTTCATGACCACCACGTTTATACCGGTG 39697 || |||||||| | | || ||||||| || || Sbjct 56 GCGACATGTTCTTTTGCTCCGTGTTTATAGCGATG 22 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132546176617404