Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq7146 168 8e-36 seq3100 107 2e-17 seq30655 91.5 2e-12 seq25844 91.5 2e-12 >seq7146 Length=6253 Score = 168 bits (186), Expect = 8e-36 Identities = 207/281 (74%), Gaps = 5/281 (2%) Strand=Plus/Minus Query 869169 CACTATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGA 869228 ||| |||| || |||||||| ||||| |||||| |||| |||||||||||||| Sbjct 5745 CACAATGCAGGCCCTCGTCGCGTGAGATCAACTCGTTGGAGAAGGTGAGGCCGGGCATGA 5686 Query 869229 GGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGA 869288 ||||||||||||| ||||| ||||| | | ||||||||||||||| || |||||||||| Sbjct 5685 GGCCGCGCTTCTTCAGCCAGAAGATCGAGGCGAAACTGCCCGAGAAGAAAATGCCCTCGA 5626 Query 869289 CGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGT-GTCGAGGCCCTCCTTGTTGATCCAC 869347 ||||||| || | |||| ||||| | ||| | | ||| || | | |||||| Sbjct 5625 CGGCGGCGAACGCAATGATGCGCTCACCGAAGTTGGCCGA----CTTCGAGGAGATCCAT 5570 Query 869348 TTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGG 869407 |||||||||||||||||| ||| | |||| ||||| || |||| || || ||| Sbjct 5569 GCCATCGCCCAGTCGGCCTTCTTCTTGACCGCCGGCAATGTTTCGACCGCATTGAACAGG 5510 Query 869408 TGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAG 869448 |||| | ||| ||| ||| |||||||| ||||| Sbjct 5509 AAGTCCCGCTGATGCGGATCCCTGATGTAGGTGTCAATCAG 5469 Score = 109 bits (120), Expect = 7e-18 Identities = 116/152 (76%), Gaps = 1/152 (1%) Strand=Plus/Minus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 ||||||||| ||||| |||||||||||||||||||| ||| | | |||||| ||||| Sbjct 5454 CCGAGTGGACATTCTCCATGGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCTGTCACTT 5395 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | ||||| | |||| || | |||| |||||| || ||||| ||| |||||||| Sbjct 5394 GCACCTCTTGGCTGAAACGCTCCACCAGATTCTCGTTGACAATGCCATCGGAGGCGGCGA 5335 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGT-GGCG 869781 | || ||||| |||||| || |||| |||| Sbjct 5334 AGAAGGCCAGCACGTGCGAAATGAAGTNGGCG 5303 >seq3100 Length=5382 Score = 107 bits (118), Expect = 2e-17 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 507737 TACAACGCCGACTTTGACGGCGACGAGATGAACCTGCACGTGCCCCAGTCCGAGACGGCG 507796 ||||||||||| || |||||||||||||||||| |||||||||| |||||| | | || Sbjct 2918 TACAACGCCGATTTCGACGGCGACGAGATGAACTTGCACGTGCCGCAGTCCATGGAGACG 2859 Query 507797 CGCGCCGAGGTGACGCACACCATGAGCGTGTCGCTCAAGACCGTGTCGCCGCAGGCCAAC 507856 |||||||| ||| | ||| | | | | ||| | | | | | |||||||||||||| Sbjct 2858 CGCGCCGAAGTGGAGAACATCCACATCACGCCGCGCCAAATCATCACGCCGCAGGCCAAC 2799 Query 507857 AAGCCCATCATCGGCCTGGTCATGGACGCCCT 507888 ||||| |||| ||| | || |||| |||| Sbjct 2798 AAGCCTGTCATGGGCATTGTGCAGGACACCCT 2767 Score = 91.5 bits (100), Expect = 2e-12 Identities = 124/172 (72%), Gaps = 1/172 (1%) Strand=Plus/Minus Query 507103 GGAGCGGTTCAAGGGCAAGGAGGGTAGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAA 507162 || ||| |||||||||||||||| | || ||||||||| ||||||||||| || | Sbjct 3372 GGCGCGCCTCAAGGGCAAGGAGGGACGCATTCGCGGCAATCTGATGGGCAAGCGTGTGGA 3313 Query 507163 CTTTACCGCGCGCGCCGTCATCAGCCCCGACCCCGAGATCGACATTGACGAGGTGGGCGT 507222 ||| | ||||| | ||||||| ||||| ||| | | || || ||||||| || Sbjct 3312 CTTCTCTGCGCGTACGGTCATCACGCCCGATCCCAACTTGCGTATCGATCAGGTGGGAGT 3253 Query 507223 GCCCTATGAGATCGTCAAGACGCTCACCTTTCCCGAGCGCGTGACGCCCCTT 507274 |||| | ||| | | ||| || ||||| ||||||| || || |||||| Sbjct 3252 GCCCCGTTCGATTGCCCAGAATCTGACCTTCCCCGAGCTGGTCAC-CCCCTT 3202 >seq30655 Length=2607 Score = 91.5 bits (100), Expect = 2e-12 Identities = 167/242 (69%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 731412 CTGCGCTACGCGCTCATGACCGGCAACTGGACCGTGCAAAAGGGCGCCGCGTC-GGCGTC 731470 ||||||||| ||||| |||||||||||| || || ||| ||| | || |||| Sbjct 1746 CTGCGCTACTCGCTCGCCACCGGCAACTGGGGCGACCAGAAGAAGGCC-CATCAGGCGCG 1804 Query 731471 GACGGGCGTCGCGCAGATGCACAACCGCATGACGGTGACGTCGGCCCTGTCCAACATGCG 731530 | || || ||||| || || ||| ||||| | | ||| | ||||| | |||| Sbjct 1805 CGCCGGTGTGTCGCAGGTGTTGAATCGCCTGACGTTCGCCTCGACGCTGTCGCATTTGCG 1864 Query 731531 CCGCGTCAACACGCCCATCAACAAGGAGGGCCGGCTGCCCAAGGTGCGCCAACTGCGCGA 731590 ||||||||| ||||||| | || ||| |||| ||||| ||| || |||| | | Sbjct 1865 GCGCGTCAACTCGCCCATTGGCCGCGACGGCAAGCTGGCCAAGCCGCGTCAGCTGCACAA 1924 Query 731591 CAGCGTGGCGGGCCTCCTGTGCCCCGTGGAGACGCCCGAGGGCGGCTCGTGCGGCCTCGT 731650 || | || |||| | ||||| |||| ||||| ||||| |||| | | ||| || || Sbjct 1925 CACCCTGTGGGGCATGCTGTGTCCCGCCGAGACCCCCGAAGGCGCCGCCGTCGGTCTGGT 1984 Query 731651 GA 731652 || Sbjct 1985 GA 1986 >seq25844 Length=6310 Score = 91.5 bits (100), Expect = 2e-12 Identities = 111/148 (75%), Gaps = 4/148 (3%) Strand=Plus/Plus Query 509048 GGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATGTTTCTGCACATG 509107 || |||||| ||||||||| | |||||| | || ||||| | | || | |||| Sbjct 1446 GGTTTTGTGTCCAACTCGTATCTGACCGGCCTGACACCGAGCGAGTTCTA-CTTC-CATG 1503 Query 509108 --ATCGGCGGGCGCGAGGGCCTCGTCGACACGGCCGTCAAGACGGCCGAGACGGGCTACA 509165 || || |||||||||||| || |||||||||| || || || ||| |||||||||||| Sbjct 1504 CCATGGGGGGGCGCGAGGGCATCATCGACACGGCGGTGAAAACAGCCCAGACGGGCTACA 1563 Query 509166 TCCAGCGCCGGTGCATCAAGTCGATGGA 509193 ||||||| || ||| ||| | ||||| Sbjct 1564 TCCAGCGGCGCCTCATGAAGGCCATGGA 1591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6104417442723622