Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq15048 304 1e-77 seq3053 129 5e-25 >seq15048 Length=4365 Score = 304 bits (336), Expect = 1e-77 Identities = 1156/1792 (65%), Gaps = 53/1792 (3%) Strand=Plus/Plus Query 138153 TTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCC 138212 ||| || || || || | ||||||| || |||||||| ||||| || ||||||||||| Sbjct 1282 TTTGTCAACCGTGAATTGAATGGCATTCGCTGCTGGTTTAGTTCTAAGGTAATACATTCC 1341 Query 138213 CGTTTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGTCGG 138272 ||||||| ||| || ||| || | | || ||||| || | | | ||| | || Sbjct 1342 AGTTTTTAGACCAGCTTTCCACGCAAAGAAATGAATCGATGTTAACTTCCCATAATTTGG 1401 Query 138273 TTTCGCCAGAAAT--ATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATG 138330 | | ||| | || || ||||| || || || |||||||| || || |||| |||| Sbjct 1402 CT-CTCCA-ACATGAATATTAAATGACTGGCTTTGATCGATAAATGCTCCTCTATCAGCA 1459 Query 138331 GCCATGTTAATTAAATTTTTACTTTTCATCTCCCACACGGTCTTGTATAGATCACGAATA 138390 ||||| |||| |||| | || ||||| || || ||||| ||||| || || Sbjct 1460 GCCATTAAAATTGTTGATTTAACTGATATTTCCCAAACAGTTTTGTAAAGATCCCGTATG 1519 Query 138391 TGTCGCGGTATTGTTGCAATATTTTGAATGCTCCCGTTGGCCGCAATGATGCGATTTCTC 138450 | | | ||||| || | |||||||||||| || | | || || ||| || Sbjct 1520 TTTTGTGGTATACTTTCGATATTTTGAATGGAACCACGGCTAGATATTATTTCGTTTTTC 1579 Query 138451 ATGTCATCGTTGTACAGATTCAACTTGATCAAGTCGTTTA-TCAGATATCTGTTTATGAC 138509 || | || | ||| || | | | | | || ||| | || || ||| | || Sbjct 1580 ATTTGTTCATCCCACAAATCTAGTTCGGTTAGATCTCTTAGTAAGTGATG-GTTAACCAC 1638 Query 138510 CTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGA 138569 |||||||| || | ||||||||| || |||||| || || | || ||||| || Sbjct 1639 TTGAAATTCGCCCGACAATACTCGCCGCGTGTAAATATTTGACGTATACGGTTCAAAAGA 1698 Query 138570 TTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGA 138629 |||||| ||||||| |||||| || |||| || || ||||| ||||| | ||||| Sbjct 1699 TTCGTTATTTCCCAAAATCTGCGCGGTGGATGCTGTTGGCATTGGTGCCACAAGTAGAGA 1758 Query 138630 ATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCGCT 138689 |||| || ||| | ||| ||| | || | ||| |||||||||| | Sbjct 1759 GTTCCTTATACCATATTTCTTTATTTTATTTTTTAAATCAATCCAATCCCACAAATTTGT 1818 Query 138690 AGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTA 138749 ||| || ||||||||| ||||| | |||||| || ||||||| || || || Sbjct 1819 AGGAGTTACTCCCCACATATCATACTGCAGTATTCCCTTGCTGACGGGACTTCCGTCATA 1878 Query 138750 CGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTA 138809 | || ||| ||||| | || |||| ||| || ||||| | || ||| | || Sbjct 1879 TGTTTCATATGGTCCAAATTTTTCTGCCAGCTCACAACTTGCCTCCAATGCGCCAAAATA 1938 Query 138810 AATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCG 138869 ||| ||||| || |||| ||| | | || | | || || || || | Sbjct 1939 AATTGTTTCAAAGATTTGCTTATTCAAAAGAAACGCGTTCTCACTTTCATAAGGGTATCT 1998 Query 138870 GAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAG 138929 | | | || ||||||||||||||||| || || | || | ||| | ||| |||| Sbjct 1999 CATTAAAATAAAAGCGTCGGCCAGCCCTTGAACACCAATACCAATAGGTCTATGTCGCAA 2058 Query 138930 ATTTGACGCTTTTGCGGCTTCGA-TA--GGATAATAGTTTACATCGATGATTTTGTTTAA 138986 ||| || |||||| |||| || |||||||| |||||||| || ||||| ||||| Sbjct 2059 ATTCGATTTTTTTGC---TTCGGGTAATGGATAATAATTTACATCAATTATTTTATTTAA 2115 Query 138987 ATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGTTCAAAATCGTATGTGCCCCCGTT 139046 ||| ||| | || || | |||||| || ||| || | | || Sbjct 2116 ATTCTTGGTGACTATTTTTGTGACCTCTTTTAATTTTTTAAAGTCAAAGA------CTTT 2169 Query 139047 GTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCAC 139106 || || ||| ||||| | || | | |||||| || | |||||| || || | Sbjct 2170 ATC-----CGCTGTC-ACAAACATATTTAAAGCAATCGAAGCGAGGTTGCAAACGGCTAT 2223 Query 139107 TTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACC 139166 || || || | ||||| |||||||| | ||| | |||||| || || || ||||| Sbjct 2224 CTCATCTGGTGCCGAATATTCAACAATTTCAGTACATAGATTACTGCATTTTATAGTACC 2283 Query 139167 TAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCC 139226 | |||||||| |||||||||| || || | ||||||||| |||||||| || || || Sbjct 2284 GAGGTTTTGTTGGTTGCTTTTTCTATTGCATGAATCTTTGTATAGCATATATGGGGTACC 2343 Query 139227 AGTTTCCACTTGTGTCTCTATAAT-GAATTTGAAC--AAGTCCCT-AGCTTGTA---TTT 139279 ||||||||||||| ||||||||| | | ||| ||| || |||| || || Sbjct 2344 TGTTTCCACTTGTGCCTCTATAATCGCA----AACCAAAGGGACTGGGCTTTTACTTTTC 2399 Query 139280 GACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTA-GAGTTCGTCGAATCGTTCACCG 139338 | | || || | || ||| || ||||| || || || || ||| ||| Sbjct 2400 TATTCGCG---CGTCCCTCTTTCTCATATTTTTCATACAAGGTC-TCAAATTCCGAACCC 2455 Query 139339 TAGGCGTCA-GAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGC 139397 | | ||| | ||| | ||||||||| ||| ||||| || ||||| | |||| || Sbjct 2456 CAAACTTCATGCAAG-CCAGGACACTTGTGAGGGCACATAAGGGACCAATCTTCGTTAGC 2514 Query 139398 CTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTT 139457 | || || |||| |||| ||| |||||||||||||| | | ||||| || || | Sbjct 2515 TTCAACTCGTTTCATAAACAAATCGGGAATCCACAAAGCATAAAATAAATCACGAGCTCT 2574 Query 139458 CTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCA 139517 | |||||| ||| |||| || | | | || ||||||| |||| |||||| Sbjct 2575 ATGTTCTTCCTTGCCCGTGTTTTTCTTTAAATCCAAAAACTCAAAAATATCAGAGTGCCA 2634 Query 139518 TGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTT---GCCACCTTGATCGACGTGTCG 139574 || || | ||||| || | || || || ||| ||| ||||| || |||| || Sbjct 2635 AGGCTCTAAGTAGATTGCAAAAGCTCCAGGCCTTTTTCCGCCTCCTTGGTCAACGTAGCG 2694 Query 139575 TACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCC----GTTGG 139630 | |||| ||||| || | | ||| ||| |||| ||| | | ||||| ||| Sbjct 2695 GGCCACATTGTTGAAAACTCTTAGCATTGGCACCAGGCCGTTAGAAGTTCCATTAGTTCC 2754 Query 139631 TGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGC 139690 || || |||| | || | |||||| | | ||| ||||| || || || || || Sbjct 2755 TGATATAGATGTGCCTTT----AGCTCGTATGCAATGAACATTTATTCCAATACCTCCAG 2810 Query 139691 CAAATTTGGATATTAAAACGCAATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGT 139750 | |||| ||||| | | |||| | | || | | |||||| || || Sbjct 2811 CTGATTTAGATATCATAGCGCATTGTTCAACTGATTTAAAAATACCTTCAATTGAATCTG 2870 Query 139751 CCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACA 139810 | ||| || | || ||||| || |||||||||||| | | || | || ||||| | Sbjct 2871 CAACCATTGTAAGTAGGAAGCAAGATGAAAGTTGCGGTCGAATTGTTGCAGCAGCAAAAA 2930 Query 139811 GAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGC 139870 | || || || ||||| || | | || ||||| | | ||| ||||| || ||| Sbjct 2931 GTGTCGGTGATGCATGCGTAAAAAATCTTTCCGACAGATAGTTGTAGGTTTCAATTGCGG 2990 Query 139871 TCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTG 139922 | ||||| || || ||||| | ||| || | ||||| ||| || || Sbjct 2991 AATCTATATCATCACCATGAATACCTATAGACACCCTCATCAACATGTGCTG 3042 >seq3053 Length=25279 Score = 129 bits (142), Expect = 5e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || || || || || || | || || ||| | | Sbjct 9963 ATGCAGATCTTTGTAAAAACCCTCACGGGGAAGACCATCACCTTAGAGGTCGAACCTTCG 10022 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || ||| ||||| || |||||||| ||||| ||||| |||||| Sbjct 10023 GACACAATCGAGAATGTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCTCCAGATCAA 10082 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATAA 24882 |||||| | || ||||| || || || | || || | || ||| |||| |||||||| Sbjct 10083 CAACGTCTAATTTTTGCTGGAAAGCAATTAGAAGA-TGGACGTACATTGTCCGATTATAA 10141 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 |||||||||||| || ||| |||| |||| Sbjct 10142 CATTCAAAAGGAGTCAACATTACATCTGGT 10171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449711083702480