Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq6153 205 8e-48 seq31959 87.8 1e-12 >seq6153 Length=7083 Score = 205 bits (226), Expect = 8e-48 Identities = 176/218 (81%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 34432 TTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATG 34491 ||||| || | || ||||| ||||||| |||||| || |||||||| ||||| || || Sbjct 2486 TTGTAGTCAAATTGGGTTTGGGCGCCCAACTCGCAGCCAAAGTACTTGGTCGGATAGGTG 2545 Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551 |||||||| || | || ||| | || | |||||| ||||||||||||||||||||| Sbjct 2546 GCCGGACGGCCGATGGCTCGGGCCACGTCCGCCATGTTCACGATGACAGTCTTGATGCCG 2605 Query 34552 TTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCC 34611 |||||||| || ||||||||||| || |||||||||||||||||||||||| ||| Sbjct 2606 TTGCCCTTGCCCTCGACCTTGGCCTGGAGGCGCGGCATTTTGTAGCGGTAGAAAATGTCG 2665 Query 34612 GCCACATTGCGGTTAACGTTCACAGTCCCCATCGTGGC 34649 | ||||||||||| ||||| || |||||||| ||||| Sbjct 2666 GTGACATTGCGGTTGACGTTGACGGTCCCCATGGTGGC 2703 >seq31959 Length=2257 Score = 87.8 bits (96), Expect = 1e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 107171 GGACTGCACGGCTTCCACGTGCACGAATTTGGCGACACCAGCAACGGCTGTACGTCCGCC 107230 || |||||||||||||| |||||||| || ||||||| || ||||||||| | |||||| Sbjct 931 GGGCTGCACGGCTTCCATGTGCACGAGTTCGGCGACAACACCAACGGCTGCATCTCCGCC 872 Query 107231 GGTGAACACTTCAATCCCACATACCAA-AATCACGGTGCGCCCGACGCCGTAGAAAGGCA 107289 || |||||||| ||| | ||| | ||||| || ||| || || || | || Sbjct 871 GGCCCCCACTTCAA-CCCGCTGGGCAAGGAGCACGGCGCCCCCACCGACGAGGAGCGCCA 813 Query 107290 CGTCGGCGATCTGGGCAACGTC 107311 ||||||| ||||||||| || Sbjct 812 TCTCGGCGACCTGGGCAACATC 791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412674725038838