Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq7146 187 4e-41 seq3100 96.9 5e-14 >seq7146 Length=6253 Score = 187 bits (206), Expect = 4e-41 Identities = 239/327 (73%), Gaps = 3/327 (1%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || |||||||| |||||| |||||| ||| ||||||||||||||||||||||||| Sbjct 5734 CCCTCGTCGCGTGAGATCAACTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCCGCGCTTC 5675 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| ||||| | ||||||||||||||| || ||||||||||||||||| || Sbjct 5674 TTCAGCCAGAAGATCGAGGCGAAACTGCCCGAGAAGAAAATGCCCTCGACGGCGGCGAAC 5615 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 | | || ||||| | || || || | | || | |||||| ||||||||| Sbjct 5614 GCAATGATGCGCTCACCGAAGTTGGCC--GACTTC-GAGGAGATCCATGCCATCGCCCAG 5558 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 || ||||| ||| | |||| |||| || |||| || || ||| |||| || Sbjct 5557 TCGGCCTTCTTCTTGACCGCCGGCAATGTTTCGACCGCATTGAACAGGAAGTCCCGCTGA 5498 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 ||| ||| ||| ||||||||| || || | ||| |||| ||||||| || || Sbjct 5497 TGCGGATCCCTGATGTAGGTGTCAATCAGAATGCTGTACATCTCCGAGTGGACATTCTCC 5438 Query 794641 ATGGCGATCTGGAAGCCATAAAAGCAG 794667 ||||||||||||||||| || |||||| Sbjct 5437 ATGGCGATCTGGAAGCCGTAGAAGCAG 5411 Score = 86.0 bits (94), Expect = 1e-10 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 796215 GGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGCGAGAC 796274 ||||||||| ||||| || |||||| || ||||||||||||| |||| ||||| | Sbjct 5306 GGCGGCGAAGAAGGCCAGCACGTGCGAAATGAAGTGACGCTCGTTGTCGGTGAGCCGTTC 5247 Query 796275 CCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGC 796334 ||||| | | |||| | |||||| ||||| || | |||||||| ||||| || || Sbjct 5246 CCAGTCGGTCATGTCCTTGGAGAGGTCCACCTCTTCAACCGTCCAAAATGAGGCTTCAGC 5187 Query 796335 CT 796336 || Sbjct 5186 CT 5185 >seq3100 Length=5382 Score = 96.9 bits (106), Expect = 5e-14 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 429059 GGAGCGATTCAAGGGCAAGGAGGGCCGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAA 429118 || ||| |||||||||||||||| || || ||||||||| ||||||||||| || | Sbjct 3372 GGCGCGCCTCAAGGGCAAGGAGGGACGCATTCGCGGCAATCTGATGGGCAAGCGTGTGGA 3313 Query 429119 CTTTACGGCGCGCGCCGTCATCAGTCCCGACCCCGAAATCGACATTGACGAGGTGGGCGT 429178 ||| | ||||| | ||||||| ||||| ||| | | || || ||||||| || Sbjct 3312 CTTCTCTGCGCGTACGGTCATCACGCCCGATCCCAACTTGCGTATCGATCAGGTGGGAGT 3253 Query 429179 GCCCTATGAGATCGTCAAGACGCTCACCTTTCCCGAGCGCGTGACGCCCTT 429229 |||| | ||| | | ||| || ||||| ||||||| || || ||||| Sbjct 3252 GCCCCGTTCGATTGCCCAGAATCTGACCTTCCCCGAGCTGGTCACCCCCTT 3202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7912718381309874