Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq3053 105 4e-18 >seq3053 Length=25279 Score = 105 bits (116), Expect = 4e-18 Identities = 158/219 (72%), Gaps = 14/219 (6%) Strand=Plus/Minus Query 34766 AGGACCAGGTG-AATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||||| || |||| || |||||| ||||||||||| || || | | || |||| Sbjct 10174 AGAACCAGATGTAATGTTGA-CTCCTTTTGAATGTTATAATCGGACAATGTACGTCCATC 10116 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || | ||||||||| || || || || ||||| || ||| | || | ||||| ||||| Sbjct 10115 TTCTAATTGCTTTCCAGCAAAAATTAGACGTTGTTGATCTGGAGGAATTCCCTCTTTGTC 10056 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCC------TCGACATCAACGGT 34938 | || || ||| || || || ||||| || || ||||| || | ||| Sbjct 10055 CTGAATCTTGGCTTTCAC--ATTCT--CGATTG--TGTCCGAAGGTTCGACCTCTAAGGT 10002 Query 34939 TATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| ||||||||||| ||||||||||||||||| Sbjct 10001 GATGGTCTTCCCCGTGAGGGTTTTTACAAAGATCTGCAT 9963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325561151509754