Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq23044 264 3e-66 seq26734 113 1e-20 seq13007 111 4e-20 >seq23044 Length=7840 Score = 264 bits (292), Expect = 3e-66 Identities = 415/588 (71%), Gaps = 12/588 (2%) Strand=Plus/Plus Query 170 GTTTTTACGCCCATCAAAGGTGTTGAGCCACCGGAGTGGTTCGCTGAAGAAGAGCTCCCT 229 || |||||||| | |||||||| | |||||| || |||||| |||| | ||| | Sbjct 513 GTATTTACGCCGCTAAAAGGTGTGGCGCCACCTGATTGGTTCACTGAGAACGAGTTAGAG 572 Query 230 CTCGCCACGATCATGTGGCAACTGACAACCAAAGAACTCTGCGGTCAGGGCCTGCTGTGC 289 || |||| |||||||| | || || | ||||||||||| || ||||| | | || Sbjct 573 CTTGCCATTGTCATGTGGGAGCTCACGATAAAAGAACTCTGTGGACAGGGTATTTTATGT 632 Query 290 GTGACTGACCTCGCAGTGCTTGAGCGGTGGTGCGTGGCCTATGAGTTCTGGCGACGTGCC 349 | || |||||||| ||||||||||| ||||| ||||||||| | | ||||| ||| Sbjct 633 ATTACCGACCTCGCTGTGCTTGAGCGCTGGTGTGTGGCCTATCATATTTGGCGTAATGCA 692 Query 350 GTGAAAAATAT--TGCCAGACAGGGCAACAC-CATCACCGGTGCAATGGGCGGCATGGTC 406 || | |||| ||| |||| | ||| | | | | ||||||| ||| ||| | Sbjct 693 GTCATTGATATCATGCGAGACGG---AACTCGCTTAATTGGTGCAACGGGTGGCCCAATA 749 Query 407 AAAAATCCGGAGCTGACCGCCAAAAAAGAACAGGAGTCCGAGATGAGCAGTACGGGGGCA 466 ||||| || || | || | |||||||| || || ||| ||| |||| || ||| Sbjct 750 AAAAACCCTGACTTAACGACAAAAAAAGAGCAAGAAAGCGAAATGGATCGTACTGGCGCA 809 Query 467 ATGCTCGGACTCGACCCCAGCAGCCGCCAGCGTCTGATTGGCCTGGCGGGGCAGAAGAAA 526 ||| | || | || || ||||| |||||||| | |||||| |||| ||||| |||||| Sbjct 810 ATGTTGGGTTTAGATCCGAGCAGTCGCCAGCGGTTAATTGGCATGGCAGGGCAAAAGAAA 869 Query 527 GCCACTAACCCGTTTCTGAAAATTATCGAATCATGAGCCGGAAATCTTACCCCAACGTAA 586 ||| || ||| ||| || || ||||||||||| ||||||||||| ||||| | Sbjct 870 CAAGATAATCCATTTATGAGGATCATTTCATCATGAGCCGTAAATCTTACCCAAACGTCA 929 Query 587 ATGCTGCAAATCAGTATGCCCGGGATGTCGTGCGCGGAAAGATTGTTGCCTGCCAGTTTG 646 ||| |||||||| ||||| || ||||| || ||||| ||| |||| || || |||| || Sbjct 930 ATGTGGCAAATCAATATGCGCGTGATGTGGTTCGCGGCAAGGTTGTAGCGTGTCAGTATG 989 Query 647 TGATTCAGGCCTGCCAGCGCCATCTTGATGACCTGATGGCGGA--AAAAAGTAAGT-CGT 703 | ||| | || ||||| || || ||||||| ||||| | | |||| || | Sbjct 990 TCATTGATGCTTGCCAACGACACATTGATGA---TATGGCCCAAGAGAAAGGGCGTAAAT 1046 Query 704 TTCGTTACCGCTTCGACAAGGACCTGGCTGAACGGGCCGCGAAATTTA 751 | || || || || || || ||| |||| |||| ||||| || |||| Sbjct 1047 TCCGCTATCGATTTGATAAAGACTTGGCAGAACAAGCCGCTAAGTTTA 1094 Score = 215 bits (238), Expect = 1e-51 Identities = 305/429 (71%), Gaps = 0/429 (0%) Strand=Plus/Plus Query 1804 ACAGCCGAACGCTTTCAGAAATGGGTGGAAATGGGCGTTCTGACCGTTACCGATGGTGCA 1863 || || ||||| ||| ||||||||||||| ||| | ||| | || || ||||| Sbjct 2313 ACCGCAGAACGGTTTAGAAAATGGGTGGAAACAGGCCATTTGAAGCTAACTGACGGTGCC 2372 Query 1864 GAGGTGGATTATCGCTACATCCTCGAAGAGGCCAAAGCGGCGAACAAAATCAGCCCGGTC 1923 || | ||||||||| || | || || |||||||| | ||| | | |||| | Sbjct 2373 GAAATTGATTATCGCGTTATTTTAGAGGATGCCAAAGCAGATAACTTGAATAACCCGATT 2432 Query 1924 AGTGAGTCACCCATCGACCCTTTCGGAGCGACCGGGCTGTCACATGACCTTGCTGATGAA 1983 | ||| || || |||||| ||| || || | || || | || |||||||| Sbjct 2433 AATGAAAGCCCGATTGACCCTCACGGCGCAACAAACTTATCTCACCAACTGGCTGATGAG 2492 Query 1984 GACCTGAATCCCGTTACTATCGTCCAGAACTTCGCCAATATGTCCGACCCGATGAAAGAG 2043 | | || || | || || || || |||| | | |||||||| ||||||||||||||| Sbjct 2493 GGATTAAACCCTATCACCATTGTTCAAAACTACACGAATATGTCTGACCCGATGAAAGAG 2552 Query 2044 CTGGAGGCAGCGATTGAATCGGGACGCTTTCATCATGACGGCAATCCCATCATGACCTGG 2103 || || || ||||||| || || |||||||||||||| ||||| || |||||||| ||| Sbjct 2553 CTTGAAGCGGCGATTGCTTCAGGGCGCTTTCATCATGATGGCAACCCAATCATGACATGG 2612 Query 2104 TGTATCGGCAATGTGGTCGGCAAAAACATGCCAGGTAACGATGATTTAGTGAAGCCCGTC 2163 ||||| || |||||||| || ||| | | || |||||||||||| | || | ||| | Sbjct 2613 TGTATGGGGAATGTGGTGGGTAAATATTTACCGGGTAACGATGATGTCGTTAGGCCTATA 2672 Query 2164 AAAGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGA 2223 |||||||| ||||| ||||| || ||||| || ||| | |||||||| | || | Sbjct 2673 AAAGAGCAAAACGAAAATAAAATTGACGGTGCTGTCGCGTTAATTATGGCTATCGGACGG 2732 Query 2224 GCCATGCTG 2232 || |||||| Sbjct 2733 GCGATGCTG 2741 Score = 163 bits (180), Expect = 7e-36 Identities = 180/240 (75%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 1224 TACCACAATGCTTACCGGGATGGGGGCGCGACGTCAGCCACTGATGTGGGCCATCACCAC 1283 ||| || ||| | || ||||||||||| |||| ||||| |||||||||| || ||||| Sbjct 1633 TACAACCATGTTAACGGGGATGGGGGCAAGACGGCAGCCGTTGATGTGGGCTATTACCAC 1692 Query 1284 CGCCGGGTACAACATTGAGGGGCCGTGCTACGACAAACGGCGGGAAGTCATCGAGATGCT 1343 || || || ||||| || ||||| |||||||| || || || ||||| || |||||| | Sbjct 1693 AGCAGGTTATAACATCGAAGGGCCTTGCTACGATAAGCGTCGCGAAGTGATTGAGATGTT 1752 Query 1344 CAACGGCTCGGTGCCTAACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAGGTGA 1403 || || |||| || || || ||| | ||||| | ||||||||||| ||||| || || Sbjct 1753 GAATGGTACGGTTCCCAATGAGGAATTATTCGGTGTTATCTATACCGTGGATGAGGGCGA 1812 Query 1404 CGACTGGACCGACCCGCAGGTGCTGGAAAAAGCCAATCCAAATATTGGCGTGTCGGTTTA 1463 ||||||||| || || | |||| | ||||| || || || || || || || || || Sbjct 1813 CGACTGGACAGATCCTAACACGCTGAAGAAAGCTAACCCGAACATGGGGGTTTCAGTCTA 1872 Score = 149 bits (164), Expect = 2e-31 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 893 ACACCGAAATCCCCCGTAAGAACGGCAAATCAGCAATCTCTGCCGGTGTTGCCCTGTATT 952 ||||||| ||||||||||| || || ||||| || || ||||| || || || | |||| Sbjct 1292 ACACCGAGATCCCCCGTAAAAATGGGAAATCGGCTATTTCTGCGGGGGTCGCATTATATT 1351 Query 953 GTTTTGCCTGTGATAACGAGTTTGGCGCGGAAGTGTATTCCGGTGCCACGACAGAGAAAC 1012 ||||| | ||||||||||| ||||| || ||||| || || ||||| || || || || | Sbjct 1352 GTTTTACGTGTGATAACGAATTTGGTGCTGAAGTTTACTCGGGTGCAACAACCGAAAAGC 1411 Query 1013 AGGCGTGGGAAGTCTTTCGCCCGGCGCGACTGATGTGTAAACGCACACCCATGCTGACGG 1072 | ||||||||||| || | || || | | ||||| || || ||||| | || || | Sbjct 1412 AAGCGTGGGAAGTGTTCAGGCCTGCAAAATTAATGTGCAAGCGTACACCGTTACTCACAG 1471 Query 1073 AAGCGTTCGGGATTGAGGTTAACGCCTCAAAC 1104 |||| || || ||||| || |||||| |||| Sbjct 1472 AAGCATTTGGTATTGAAGTGAACGCCAAAAAC 1503 >seq26734 Length=1040 Score = 113 bits (124), Expect = 1e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 760 TTGCCGCACACCAAGGGGGAGTGGGCATTCAAACGGATGCCCATCACGCTGGAGCCGTGG 819 || || ||||| ||||||||||||||||| ||||| || || || ||||| || |||||| Sbjct 5 TTACCCCACACAAAGGGGGAGTGGGCATTTAAACGAATTCCGATTACGCTCGAACCGTGG 64 Query 820 CAGCTATTTGTGATCTGCTGTGCGTTTGGCTGGGTCAATAAAGGCACCCGGTTGCGCCGC 879 || || ||| | | || ||||| ||||||||||| | ||||| || | | || Sbjct 65 CAACTTTTTATCGTTTGTTGTGCATTTGGCTGGGTGCAAAAAGGTACGAAACTTAGGCGA 124 Query 880 TTCCGGGAGGTGTACACCGAAATCCCCCGTAAGAA 914 || || || || |||||||| ||||||||||| || Sbjct 125 TTTCGTGAAGTTTACACCGAGATCCCCCGTAAAAA 159 Score = 109 bits (120), Expect = 1e-19 Identities = 188/268 (70%), Gaps = 4/268 (1%) Strand=Plus/Plus Query 1472 TTTTGTTAAGTCAGCAGCAGCGTGCGAAAAATAACGCCCGTCTGGCAAACGTCTTTAAAA 1531 |||| | |||||||| | || || |||| || | || || ||| | |||| |||| Sbjct 764 TTTTAATTAGTCAGCAAAATCGAGCTAAAAGCAATCCGCGCCTAACAAGCATCTTCAAAA 823 Query 1532 CAAAACACCTCAATATCTGGGTGTCGGCGCGTTCGGCGTATTTCAACCTGGTGAGCTGGC 1591 | || || | ||||||||||| || |||||||| ||||||||||| || |||| |||| Sbjct 824 CTAAGCATTTAAATATCTGGGTTTCAGCGCGTTCAGCGTATTTCAATATGTTGAGTTGGC 883 Query 1592 -AGAGCTGCGAGGATAAATCACTGACTCTTGAGCAGTTCGAGGGGCAGCCGTGCATTCTG 1650 |||| || || |||||| | ||||| || || ||| || ||||| | || ||| Sbjct 884 GAGAG-TGTGAAGATAAAACCCTGACACTAGAAATGTTTGAAGGGCAATCTTGTGTTCAA 942 Query 1651 GCCTTTGACCTGGCGCGTAAGCTGGATATGAACAGCATGGCGCGACTT-TATACCCGCGA 1709 | | ||| |||| | ||| ||||||||||| || || | || | ||| ||||| Sbjct 943 TCTCTCGACTTGGCCAGAAAGTTGGATATGAAC-TCACGGGTTAAATTGTTTACGCGCGA 1001 Query 1710 GATTGACGGTAAAACGCATTACTACAGT 1737 ||||| || | |||||| ||| || Sbjct 1002 AATTGATGGCAGGCGGCATTATTACTGT 1029 >seq13007 Length=9541 Score = 111 bits (122), Expect = 4e-20 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23339 TGCGTGTTCGGTAAGGTGATTAGGTGCAAGGTGAGCATATCGACGAACCATTTCGATAGA 23398 ||| ||||| || || ||||| || || | |||||||| | | |||||||| || || Sbjct 9392 TGCATGTTCAGTTAGATGATTCGGCGCTAAATGAGCATACCTTCTCACCATTTCTATTGA 9451 Query 23399 CTCCCAGCCTCCCATTTCCTGTAAAACTGACAACGGGACTCCGGCTTGAACCAGCCAACT 23458 ||||| ||||||||||| || | | || || || ||||||| ||||| |||||||| Sbjct 9452 TTCCCATCCTCCCATTTCTTGAAGTGCAGATAATGGAACTCCGGACTGAACAAGCCAACT 9511 Query 23459 TGCCCAGGTGTGTCTCAAGTCGTGAAATC 23487 ||||| || || |||||||| ||||||| Sbjct 9512 CGCCCAAGTATGCCTCAAGTCATGAAATC 9540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127053940566240