Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_022750.1 Length=33628 Score E Sequences producing significant alignments: (Bits) Value seq13268 109 1e-19 seq23182 84.2 5e-12 >seq13268 Length=3871 Score = 109 bits (120), Expect = 1e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 22898 TTGCAGGTAGTCAGGCGCAAGGTGCGCATAGGCCATCGTCTGCTGAATGCTCGCATGTCC 22957 ||||| || ||||| || | ||| ||||| ||||| ||||| ||||| | || || || Sbjct 3081 TTGCAAATAATCAGGGGCTAAGTGAGCATAAGCCATTGTCTGTTGAATATTGGCGTGACC 3140 Query 22958 CAGAATCTGTTGCAGTGCGATTATATTGCCCCCATTCATCATGAAATGGCTTGCGAATGT 23017 | || |||||||| || | |||||||| |||||||||||||| || |||||||| || Sbjct 3141 TAATATTTGTTGCAGAGCAACAATATTGCCACCATTCATCATGAAGTGACTTGCGAAAGT 3200 Query 23018 ATGCCGCAGGATGTGGGTTGCCTGATTGGGTGGTATATCTGGCTTCAC 23065 ||||| || | ||| || || ||| | ||| | ||| || || || Sbjct 3201 ATGCCTAAGAACGTGCGTAGCTTGACCGTCTGGCAAATCAGGTTTAAC 3248 >seq23182 Length=1552 Score = 84.2 bits (92), Expect = 5e-12 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 23895 ATATAGTGTTAACCAGTCTGTTTTTCGGAGTGGTCTGATTCTGTTGGTTTTTGCCCAATG 23954 || || ||||||||||| | ||||| || ||| ||| ||||| || | ||||| || Sbjct 1551 ATGTATTGTTAACCAGTTTTCTTTTCTGAATGGGGTGAGGTTGTTGTTTCTGGCCCATTG 1492 Query 23955 TGTGCGAGAGCCGGCGCGATCTGACCAGCTT 23985 |||||||||||||| ||||| |||||||||| Sbjct 1491 TGTGCGAGAGCCGGTGCGATTTGACCAGCTT 1461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107445666254280