Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_023557.1 Length=271084 Score E Sequences producing significant alignments: (Bits) Value seq3187 210 4e-49 >seq3187 Length=10884 Score = 210 bits (232), Expect = 4e-49 Identities = 345/497 (69%), Gaps = 8/497 (2%) Strand=Plus/Minus Query 71517 CTCGATTCAGGGTCGTAGCCCGAACGTGGCCTTGCTGCCGATCTGTTCTATCCCGGAACT 71576 ||| ||||||||||| ||||| |||||||| || ||||| | ||| || || || || Sbjct 5866 CTCTATTCAGGGTCGCAGCCCTAACGTGGCATTACTGCCACTAATTTCGATTCCTGAGCT 5807 Query 71577 CGAAACCTGGATTGAAACCTGGGCGTTCTCTGAAACGATTCACTCGCGCTCATACACCCA 71636 ||||||||| | ||||| ||||| ||||||||||| || ||||| || |||||||| || Sbjct 5806 GGAAACCTGGGTGGAAACATGGGCATTCTCTGAAACCATCCACTCACGTTCATACACTCA 5747 Query 71637 CATCATCCGTAATATCTTTACTGACCCCTCCATCGTGTTTGATGACATCGTGACCAACGA 71696 || |||||||||||| | | |||||| | || | ||||| || ||||| || || Sbjct 5746 TATTATCCGTAATATCGTGAATGACCCGGCGATTATTTTTGACGATATCGTTGAAAATGA 5687 Query 71697 ACACATCAAAGCGCGTGCTGAGTCCGTCACGGAGTATTACGACCAGCTGATCGAAATGAC 71756 | | || | ||||| | || | | ||||| || | || ||||||||||| Sbjct 5686 AGAAATTTTAAAACGTGCGAAAGATATCTCTGGTTATTATGATGACCTCATCGAAATGAC 5627 Query 71757 CATGTACCTCAACTTACTGGGTGAAGGTACTCA----TGTAATCAATGGTAAGAAAGTCG 71812 || || || | | |||||||| || || ||| || || || || || Sbjct 5626 CAACTATTATCACATGTTCGGTGAAGGCACACACAACTGT----AACGGAAAACAAATCA 5571 Query 71813 TGGTCTCGATGCGTGCTATCAAGCGTCTGGTCTACCTGTGCATCGTGTCGGTCAACGTGT 71872 || || ||||||| | || | | ||||||||| | || || |||| Sbjct 5570 CCGTTTCATTGCGTGCGCTGAAAAAACAATTATACCTGTGCTTAATGAGTGTTAACGCAC 5511 Query 71873 TGGAAGCCATCCGCTTCTATGTCTCGTTTGCCTGCTCGTTTGCCTTTGCTGAACGCGAGC 71932 ||||||| ||||| || |||||| |||||||| || || || || || ||||| |||| Sbjct 5510 TGGAAGCAATCCGATTTTATGTCAGCTTTGCCTGTTCATTCGCATTCGCAGAACGTGAGC 5451 Query 71933 TGATGGAAGGCAACGCCAAGATCATTAAACTGATCGCCCGTGATGAAGCCCTGCATCTGA 71992 | |||||||| || || || || || || ||||| || ||||||||||| | || | | Sbjct 5450 TAATGGAAGGTAATGCTAAAATTATCAAGCTGATTGCACGTGATGAAGCTTTACACTTAA 5391 Query 71993 CCGGCACCCAGCACATG 72009 | ||||| || || ||| Sbjct 5390 CAGGCACTCAACATATG 5374 Score = 150 bits (166), Expect = 3e-31 Identities = 186/249 (75%), Gaps = 9/249 (4%) Strand=Plus/Minus Query 72151 ATGATCGGTCTGAACAAAGAGATCGTGTGCCAGTACATCGAATACATCACCAACATCCGT 72210 ||||| || ||||| ||||| || ||||||| || ||||||||||||||||||| ||| Sbjct 5169 ATGATTGGCCTGAATAAAGATATTCTGTGCCAATATGTCGAATACATCACCAACATTCGT 5110 Query 72211 ATTCGCGCCATCGGT-TACGA-TGACATCTACGCCGGT-GTCAAAGCTAACCCAATCCCA 72267 || | || | || || | || ||| | | ||| || ||||||| |||||| Sbjct 5109 ATGCAAGCTGTTGGCCTAAAACTGCCATTT--GAAGGTCGTT----CTAACCCTATCCCA 5056 Query 72268 TGGATCAACTCCTGGTTGGTTTCTGACAACGTGCAAGTCGCTCCACAGGAAGTGGAAGTA 72327 |||||||| | |||||||| || || ||||| ||||| || ||||| ||||| ||||| Sbjct 5055 TGGATCAATGCATGGTTGGTATCAGATAACGTTCAAGTGGCGCCACAAGAAGTTGAAGTC 4996 Query 72328 AGTTCTTATCTGGTCGGTCAGATAGACTCGAAAGTGGACGCCAACGATTTCGACGATTTC 72387 ||||||||| | ||||||||||| ||||| |||| | || | ||||| ||| || Sbjct 4995 AGTTCTTATTTAGTCGGTCAGATTGACTCTGAAGTCAATACCGATGATTTGAGCGACTTT 4936 Query 72388 CAACTGTAA 72396 |||||||| Sbjct 4935 GAACTGTAA 4927 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 71290 AAAAACGATCAGATGGCTGAACCGATGTTCCTGGGTCAGTCGGTTAACGTCTCACGTTAT 71349 ||||| || |||||| || |||||||| | || || | |||||||| |||| ||| Sbjct 6150 AAAAATGACCAGATGCAGGAGCCGATGTTTTTCGGCCAACCTGTTAACGTGGCACGCTAT 6091 Query 71350 GATCAGCAGAAGTACCCCGCGTTCGAAAAGCTGATTGAGAAACAACTTTCATTCTTCTGG 71409 |||||||| |||||||| |||||||||||||| || || ||| | || || |||||| Sbjct 6090 GATCAGCAAAAGTACCCTATTTTCGAAAAGCTGATCGAAAAGCAATTGTCGTTTTTCTGG 6031 Query 71410 CGACCTGAAGAGGTGGATGTTTCGCAAGACCGTATCGA 71447 || |||||||| || || || || | ||||| || || Sbjct 6030 CGTCCTGAAGAAGTTGACGTCTCTCGCGACCGCATTGA 5993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 866981222187840