Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq3370 199 3e-45 seq1101 120 2e-21 >seq3370 Length=4466 Score = 199 bits (220), Expect = 3e-45 Identities = 474/708 (67%), Gaps = 14/708 (2%) Strand=Plus/Plus Query 282179 GTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTT 282238 || || ||||| || || ||||||||||| ||||| | |||| || | || | | Sbjct 3740 GTAACCAGACGGTTGTCGAAATCTTCACCACCCAAATGGGTATCGCCAGCAGTCGACTTG 3799 Query 282239 ACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATA 282298 || | ||| | ||||| || | |||| || | |||||| || || ||||||| | Sbjct 3800 ACCTCGAAGATGCCATCGTCGATGGACAGAATGGACACATCAAAAGTACCGCCACCCAAA 3859 Query 282299 TCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCA 282358 || || || || || || || | | || || || | ||||| || | ||| Sbjct 3860 TCGAAGATGAGCACGTTGCGCTCACCGACAGCCTTCTTGTCCAAGCCATAGGCGATGGCA 3919 Query 282359 GCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCT 282418 || ||||| || || || || || | ||| ||||| | ||| ||||| | || ||||| Sbjct 3920 GCGGCAGTGGGCTCGTTGATGATACGCAACACATTCAAACCGGCAATGGTACCGGCATCC 3979 Query 282419 TTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTT 282478 || || || || | |||||| ||||| || || || || ||||| || || |||| | Sbjct 3980 TTGGTAGCCTGACGTTGTGAGTCGTTGAAGTAGGCCGGGACAGTGATCACAGCATTGCTG 4039 Query 282479 ACT-TCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGA 282537 ||| |||| |||| || || || || | ||||| || | | | ||| || || Sbjct 4040 ACTGTCTTGCCCAAG-TAGGCCTCGGCGGTCTCCTTCATCTTGGTCAGGACCATCGAAGA 4098 Query 282538 AATTTGTTCTGG--AGAATAT-TGCTTGGATTCATTTT-GATATGATACTTCAAAATATG 282593 |||| || || |||| | | ||| || || | || | || | | | | Sbjct 4099 GATTTCCTCAGGGAAGAAAGTCTTCTTCTCGTCCTTGTAGACA----ACCTGGATCTTGG 4154 Query 282594 GTTTATTACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTT 282653 | || | || | ||| || | || ||||| | ||||| || ||||| ||| Sbjct 4155 GCTTGCCATCAGCGCTAACCACCTCGAAGGGCCAGTGCTTCATGTCGGATTG--CACGGC 4212 Query 282654 GG--TCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATT 282711 || || | || | | |||||| || || || ||||| ||||| || |||||||| || Sbjct 4213 GGCATCCTCGAATTTGCGACCAATCAAACGCTTAGCATCGAAAATGGTGTTGGTTGGGTT 4272 Query 282712 AACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAAC 282771 | || | |||| |||||||||||| ||||| ||| |||| || || || || | ||| Sbjct 4273 CATGGCGACCTGATTTTTGGCTGCATCACCAATGAGACGTTCAGTTTCGGTGAAGGCAAC 4332 Query 282772 ATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTG 282831 ||| || ||||| || || || || || || || ||||||||||||||||| |||| ||| Sbjct 4333 ATACGACGGAGTGGTACGGTTGCCCTGGTCGTTGGCAATAATTTCAACTTTTCCATGTTG 4392 Query 282832 CCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 282879 | ||||| || ||| | ||||| || ||||||||||||| ||| Sbjct 4393 GAACACACCCACGCAAGAGTAGGTTGTGCCCAAATCAATACCAACAGC 4440 >seq1101 Length=117299 Score = 120 bits (132), Expect = 2e-21 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 282333 TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACAT 282392 |||| || | ||||| |||| ||| || ||||||||||| || || | | ||||| | Sbjct 48774 TTTTGTCCATTCCATAAGCAAGAGCTGCTGCAGTTGGTTCGTTGATTACACGTAAAACGT 48715 Query 282393 TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATG 282452 | | |||||||||| || ||||||||||||||||| | |||||||||||| ||||||| Sbjct 48714 TCAAACCAGCAATTTGACCAGCATCTTTAGTGGCTTGACGTTGTGAATCGTTGAAATATG 48655 Query 282453 CAGGAACAGTAATAACGGCAT 282473 |||| || |||| || |||| Sbjct 48654 CAGGCACTGTAACGACTGCAT 48634 Score = 87.8 bits (96), Expect = 1e-11 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 86119 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 86178 || || ||||||||||||||||||||||| || |||| | ||| | ||||| ||| Sbjct 48763 CCATAAGCAAGAGCTGCTGCAGTTGGTTCGTTGATTACACGTAAAACGTTCAAACCAGCA 48704 Query 86179 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 86238 |||| | ||| ||| ||| ||||| | |||| || || |||||||| || || ||| Sbjct 48703 ATTTGACCAGCATCTTTAGTGGCTTGACGTTGTGAATCGTTGAAATATGCAGGCACTGTA 48644 Query 86239 ATAACTGCTTTATTAATAGGT 86259 | ||||| || || | |||| Sbjct 48643 ACGACTGCATTCTTCACAGGT 48623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739002089559516