Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq15048 168 7e-37 >seq15048 Length=4365 Score = 168 bits (186), Expect = 7e-37 Identities = 727/1132 (64%), Gaps = 58/1132 (5%) Strand=Plus/Plus Query 150720 GGTTGACAACTTGAAATTCGCCCGACAAAACACGTCTCAAAAACAAATT--ACTGTGAAA 150777 |||| || |||||||||||||||||||| || || | | | | ||| || || | | Sbjct 1629 GGTTAACCACTTGAAATTCGCCCGACAATACTCGCCGCGTGTAAATATTTGAC-GT-ATA 1686 Query 150778 CGGTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGC 150837 ||||||||| || ||||| || | || || ||||| | || || ||||| || Sbjct 1687 CGGTTCAAAAGATTCGTTATTTCCCAAAATCTGCGCGGTGGATGCTGTTGGCATTGGTGC 1746 Query 150838 CACAAGCAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTGTGACCAGTC 150897 |||||| | || || | || || ||||| | ||| || |||| || | ||| || Sbjct 1747 CACAAGTAGAGAGTTCCTTATACCATATTTCTTTATTTTATTTTTTAAATCAATCCAATC 1806 Query 150898 CCATAACGAAGTCGGTACCGTATTCC--ACAAATCGTATTGCAATATTCCTTCGCTCGCT 150955 ||| || || || || ||| ||| ||| || |||| |||||| | ||| | Sbjct 1807 CCACAAATTTGTAGGAGT--TACTCCCCACATATCATACTGCAGTATTCCCTTGCTGACG 1864 Query 150956 TTGCTACCGGCAAACGTGCTATAAGGCTCACTAACAGATGCCAGTTCGTAACTGGCCTCG 151015 || ||| || | || ||| || || |||||| || |||| ||||| Sbjct 1865 GGACTTCCGTCATATGTTTCATATGGTCCAAATTTTTCTGCCAGCTCACAACTTGCCTCC 1924 Query 151016 AGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTC 151075 | || || ||| | |||||| ||||| |||||||| |||| || || || Sbjct 1925 AATGCGCCAAAATAAATTGTTTCAAAGATTTGCTTATTCAAAAGAAACGCGTTCTCACTT 1984 Query 151076 ACGTACGG-TATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCTATGCCGAT 151134 | || || ||| | || | || ||| || ||||||| ||||||| || || || || Sbjct 1985 TCATAAGGGTAT-CTCATTAAAATAAAAGCGTCGGCCAGCCCTTGAACACCAATACCAAT 2043 Query 151135 GGGACGATGGCGCATATTAGAtttttttGCAGTTTC----AATAGGGTAGAAATTGCGAT 151190 || | ||| |||| ||| ||||||||||| ||| ||| || || |||| || Sbjct 2044 AGGTCTATGTCGCAAATTCGATTTTTTTGC---TTCGGGTAAT-GGATAATAATTTACAT 2099 Query 151191 CAATAATTTTATTCAAACTATTC---ACTACATGTTTGACCACAGTGTGCAATAGTTGAA 151247 |||| |||||||| ||| | || |||| | | ||||| | | ||| || || Sbjct 2100 CAATTATTTTATTTAAATTCTTGGTGACTATTTTTGTGACCTCTTTT---AATTTTTTAA 2156 Query 151248 AATCAAAAG---TATCATTATTGATATATTTATTGACGGCAATCGACGCTAGATTACATA 151304 | ||||| |||| | | | | |||| | |||||||| || || || || | Sbjct 2157 AGTCAAAGACTTTATCCGCTGTCACAAACATATTTAAAGCAATCGAAGCGAGGTTGCAAA 2216 Query 151305 CGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTA 151364 |||| | || || || || |||||| || ||||| | ||| | ||| |||||||||| Sbjct 2217 CGGCTATCTCATCTGGTGCCGAATATTCAACAATTTCAGTACATAGATTACTGCATTTTA 2276 Query 151365 TCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACG 151424 | ||| || ||| |||||||| | ||||| | || ||||||| ||| || | Sbjct 2277 TAGTACCGAGGTTTTGTTGGTTGCTTTTTCTATTGCATGAATCTTTGTATAGCATATATG 2336 Query 151425 GTGTGCCGGTTTCGGCTTGAATTTCTATAATGTTTCGC--ATTAATGTAACCGCGGGCAT 151482 | || || ||||| |||| ||||||| |||| | || | || |||| | Sbjct 2337 GGGTACCTGTTTCCACTTGTGCCTCTATAA----TCGCAAACCAAAGGGAC--TGGGCTT 2390 Query 151483 TTGC--------TCGCGAAACTGGCCTTTATCCTCATAATGTTTGTACCAGTATTCAAAG 151534 || | ||||| | || | | |||||| | || ||| || ||||| Sbjct 2391 TTACTTTTCTATTCGCG----CGTCCCTCTTTCTCATATTTTTCATACAAGGTCTCAAAT 2446 Query 151535 TC--ATCACCATACGTATCGTTGAGCTTAGGACACTCGTTAGGACACATTAATGACCATA 151592 || | | ||| || || | | |||||||| || ||| ||||| | ||||| Sbjct 2447 TCCGAACCCCAAAC--TTCATGCAAGCCAGGACACTTGTGAGGGCACATAAGGGACCAAT 2504 Query 151593 TACCGTTTTCTTCAACGCGTTTCATAAATATATCCGGAACCCATAATGCGTTCATCAAAT 151652 |||| ||||||| ||||||||||| | ||| |||| ||| || || | | |||| Sbjct 2505 CTTCGTTAGCTTCAACTCGTTTCATAAACAAATCGGGAATCCACAAAGCATAAAATAAAT 2564 Query 151653 CACGCGCTTTGGTGTCTTCGCTGCCAATGTTTCGACGCATGTGTAAAACGTCCATAATGT 151712 |||| ||| | ||||| |||| ||||| | | |||| || | ||| | Sbjct 2565 CACGAGCTCTATGTTCTTCCTTGCCCGTGTTTTTCTTTAAATCCAAAAACTCAAAAATAT 2624 Query 151713 CGCAATGCCACGGTTCAACGTACACTGCTTGGGC-----GCCTTTTCGCTTGCCACCTTG 151767 | | ||||| || || | ||| | ||| || ||||||| | ||| ||||| Sbjct 2625 CAGAGTGCCAAGGCTCTAAGTAGATTGCAAAAGCTCCAGGCCTTTTTCC--GCCTCCTTG 2682 Query 151768 ATCCACGTGACGCACCATATTATTAAAAACTCGCAGCATTGGTAGCAGTCCG 151819 || |||| || ||| ||| || ||||||| |||||||| | ||| ||| Sbjct 2683 GTCAACGTAGCGGGCCACATTGTTGAAAACTCTTAGCATTGGCACCAGGCCG 2734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488341461871200