Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_023717.1 Length=151924 Score E Sequences producing significant alignments: (Bits) Value seq3187 107 2e-18 >seq3187 Length=10884 Score = 107 bits (118), Expect = 2e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 121690 TCAGCATATACTGAGTTCCTGACAAATGCAAGGCTTCATCACGAGCAATTAACTCGATGA 121749 ||| ||||| ||||| |||| || || || ||||||||||| ||||| | || ||| | Sbjct 5370 TCAACATATGTTGAGTGCCTGTTAAGTGTAAAGCTTCATCACGTGCAATCAGCTTGATAA 5429 Query 121750 TGTTGGTATTGCCCAGCATAACCCCACGCTCACCGAAAGCGAAGGAGCAGGCAAAGCTCA 121809 | || | ||| || ||| | | |||| || |||| ||||| || ||||||||||| | Sbjct 5430 TTTTAGCATTACCTTCCATTAGCTCACGTTCTGCGAATGCGAATGAACAGGCAAAGCTGA 5489 Query 121810 CGTAGAAGCGGATAGCTTCGAGTGCGTTGATATTGTGCAGGCACAGGTA 121858 | || || ||||| ||||| |||||||| | | | | ||||||||| Sbjct 5490 CATAAAATCGGATTGCTTCCAGTGCGTTAACACTCATTAAGCACAGGTA 5538 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 122218 TGTAGTCAATTCGGTCACGGGTCACGTTCACCTCTTCCGGACGCCAGAAGAATGCCAGTT 122277 |||| ||||| ||||| || | |||| || ||||| ||||||||||| || | || || Sbjct 5988 TGTAATCAATGCGGTCGCGAGAGACGTCAACTTCTTCAGGACGCCAGAAAAACGACAATT 6047 Query 122278 GCTTTTCGATCAGCTTTTCGAACTTAGCGTGTTTTTGCTGGTCATAACGAGAAACGTTCG 122337 |||||||||||||||||||||| ||| || |||||||| ||||| || | ||||| Sbjct 6048 GCTTTTCGATCAGCTTTTCGAAAATAGGGTACTTTTGCTGATCATAGCGTGCCACGTTAA 6107 Query 122338 GCGTCTCACCGAGGAACATCGGCT 122361 | | |||| |||||||||| Sbjct 6108 CAGGTTGGCCGAAAAACATCGGCT 6131 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 8/205 (4%) Strand=Plus/Plus Query 123358 GTTGATTGCAGACAGCGTACAAAGTGCAATCTCGCCATCGTCCTCAGGATTTTTGAGGTC 123417 ||| | ||||||||| ||||| | |||||| || || || || ||| |||| | Sbjct 7137 GTTAAATGCAGACAGTGTACATAATGCAATTTCACCTTCTTCATCA------TTGATATT 7190 Query 123418 ATTGATCGCGTGAGTAGGCAGGGCAATCTCCATGCACAGGTTGGACTGTTTCACCGGGGC 123477 ||| | | | ||| ||||| || || || | |||||||| || || || ||||| Sbjct 7191 ATTCAATGGTTTAGTTGGCAGCGCGATTTCTAAACACAGGTTAGATTGACGGACAGGGGC 7250 Query 123478 CAGTTCTGGATTGAACGGGCTGTTGGTGTTGCAGTGGTCAACGTGCTGAATGTAGATGCG 123537 | | ||| | || ||||| | || || ||||||||||||| |||||||| || || Sbjct 7251 AACCTGTGGGTCAAATGGGCTATGCGTATTACAGTGGTCAACGTTTTGAATGTAAATTCG 7310 Query 123538 TCCTGTCTGAC-TGCGCTCCTGCAT 123561 ||||| |||| ||||| ||||| Sbjct 7311 GCCTGT-TGACGCACGCTCTTGCAT 7334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 485827304610240