Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_024124.2 Length=169148 Score E Sequences producing significant alignments: (Bits) Value seq3187 141 1e-28 seq27670 113 5e-20 >seq3187 Length=10884 Score = 141 bits (156), Expect = 1e-28 Identities = 153/199 (77%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 27440 GGTGAAG--TTCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAA 27497 ||||||| ||| ||| | || ||| ||||| |||| || || ||||| ||||| || | Sbjct 7727 GGTGAAGCTTTCCACACA-GGCTGT-ATTCCGTTCTACAAGCACTTCCAGACTGCGGTTA 7670 Query 27498 AATCTTGTTCTCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGC 27557 ||||||| |||||||||||| | ||||||||||||||||| | ||| || || |||| Sbjct 7669 AATCTTGCTCTCAAGGTGGTGTCCGTGGTGGTGCTGCTACCTTATTTTACCCAATTTGGC 7610 Query 27558 ACTTAGAAGTAGAGAACCTATTAGTTCTGAAAAATAATAAAGGTGTGGATGAAAACCGTA 27617 || | ||||| || | ||| ||||| |||||||| || || || || | ||||| Sbjct 7609 ACCTTGAAGTTGAAAGCCTGTTAGTCCTGAAAAACAACCGCGGGGTTGAAGGTAACCGAG 7550 Query 27618 TTCGACATATGGACTACGG 27636 |||| |||||||||||||| Sbjct 7549 TTCGCCATATGGACTACGG 7531 >seq27670 Length=3875 Score = 113 bits (124), Expect = 5e-20 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 108444 ACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAGCATCCGGAAAAATATCCTCAGC 108503 ||||| || ||||||| ||| ||| || | | | || || |||||||| |||| Sbjct 1617 ACGTTATGAACCGTGAAATGCTGTTAGAAGCGATGGAAAACCCAGAGAAATATCCACAGC 1558 Query 108504 TGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAACTCTCTGACTCCAGAACAGCAGC 108563 |||| ||||||||||| ||||||||||| || |||||||| |||||| |||||| |||| Sbjct 1557 TGACTATCCGTGTATCAGGTTATGCAGTGCGTTTTAACTCACTGACTAAAGAACAACAGC 1498 Query 108564 GCGACGTTATCGCTCGTACCTTTAC 108588 |||||||| ||||||| || || Sbjct 1497 AAGACGTTATTACTCGTACTTTCAC 1473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540921254562880