Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq31959 145 7e-30 seq7146 132 5e-26 seq15048 84.2 2e-11 >seq31959 Length=2257 Score = 145 bits (160), Expect = 7e-30 Identities = 121/148 (82%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 116467 GGCCTGCACGGCTTCCACGTGCACGAGTTTGGCGACACCAGCAACGGCTGCACCTCCGCC 116526 || |||||||||||||| ||||||||||| ||||||| || ||||||||||| ||||||| Sbjct 931 GGGCTGCACGGCTTCCATGTGCACGAGTTCGGCGACAACACCAACGGCTGCATCTCCGCC 872 Query 116527 GGCGAACACTTCAACCCCACCGGCCAGGACCACGGCGCGCCCAACGCCGCCGTTCGTCAC 116586 ||| ||||||||||| ||| |||| |||||||| |||| || || | || || Sbjct 871 GGCCCCCACTTCAACCCGCTGGGCAAGGAGCACGGCGCCCCCACCGACGAGGAGCGCCAT 812 Query 116587 GTCGGTGACCTGGGCAACATTGAGGCCA 116614 |||| |||||||||||||| ||||||| Sbjct 811 CTCGGCGACCTGGGCAACATCGAGGCCA 784 Score = 102 bits (112), Expect = 8e-17 Identities = 127/173 (73%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 116649 CGACAACGTGATGACGCTGTTCGGCGAGTACAGCGTGCTCGGTCGCAGTCTCGTCGTGCA 116708 ||||||| ||| |||||||||| | ||||| | |||| |||| | |||||||| Sbjct 661 CGACAACAAGATCTCGCTGTTCGGGGCCAACAGCATCATCGGGCGCACCATGGTCGTGCA 602 Query 116709 CACCAACGCCGACGACCTGGGACTGGGCCAGCACCCGCTTAGCAAAACCACCGGCAACTC 116768 | || | ||||||||||||| |||| ||| ||| ||||| ||||||||||| | Sbjct 601 CGCCGATCCCGACGACCTGGGCAAGGGCGGCCACGAGCTGAGCAAGACCACCGGCAATGC 542 Query 116769 GGGCGGCCGCCTCGGCTGCGGCATTATCGGCATTTCGTCATGATCGAAACAAC 116821 || | |||| |||||||||| | ||||||| || || |||| || |||| Sbjct 541 TGGGGCCCGCGTCGGCTGCGGTGTGATCGGCA--TCTGCAAGATCTAAGCAAC 491 >seq7146 Length=6253 Score = 132 bits (146), Expect = 5e-26 Identities = 269/393 (68%), Gaps = 11/393 (3%) Strand=Plus/Minus Query 120463 ACGAGCAGTCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGC-GTTCATGCC 120521 || ||||| ||||| || || || || ||||||||| |||| | | || ||||||||| Sbjct 5932 ACCAGCAGACGGTCGGCCACGAATTCGATGTACTCGGACATC-AGTTTGCAGTTCATGCC 5874 Query 120522 CAGCAACGCCACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTT 120581 | ||| ||||||| ||| |||| ||||||| || || | |||||| || | Sbjct 5873 GATCAAATTGACCGGCAGCGCTTCGGTGAGGAACTCCTGTTCGATCTTCACCGCTTCGTC 5814 Query 120582 GAACATGGCGAGCATA-GT--GTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTA 120638 || || ||| || || | ||| ||| || | ||||| || | Sbjct 5813 GATGATCTCGATGATGCGTTCGCGGCTGGGACGCT-GCACCAGATGCT-----GGAACAT 5760 Query 120639 CAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGT 120698 |||||| || || || ||||||||||||||||| || |||| ||||||| || || Sbjct 5759 CAGGCAGGCGAAATCACAATGCAGGCCCTCGTCGCGTGAGATCAACTCGTTGGAGAAGGT 5700 Query 120699 CAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAA 120758 ||||||||||||| ||| | |||| | |||| || | ||| || |||||||| || Sbjct 5699 GAGGCCGGGCATGAGGCCGCGCTTCTTCAGCCAGAAGATCGAGGCGAAACTGCCCGAGAA 5640 Query 120759 GAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCT 120818 ||| | |||||| ||| ||| || || | |||||||| | || | |||| ||| Sbjct 5639 GAAAATGCCCTCGACGGCGGCGAACGCAATGATGCGCTCACCGAAGTTGGCCGACTTCGA 5580 Query 120819 GTCGATCCACTTCATGGCCCACTCGGCCTTTTT 120851 | |||||| ||| ||||| |||||||| || Sbjct 5579 GGAGATCCATGCCATCGCCCAGTCGGCCTTCTT 5547 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/109 (80%), Gaps = 5/109 (5%) Strand=Plus/Minus Query 121056 GGCGGCGAAGAACGCCAGCACGTGCTTGATAAAGTGTCGCTCGTCGTCCGTGAGCTTGTG 121115 |||||||||||| |||||||||||| || ||||| ||||||| ||| |||||| || Sbjct 5306 GGCGGCGAAGAAGGCCAGCACGTGCGAAATGAAGTGACGCTCGTTGTCGGTGAGC-CGTT 5248 Query 121116 CGCAAAATC-GTCATAGTCCTTGGACAGGTCGACCTCCTCCACCTTCCA 121163 | | | || ||||| ||||||||| ||||| ||||| || ||| |||| Sbjct 5247 CCC--AGTCGGTCAT-GTCCTTGGAGAGGTCCACCTCTTCAACCGTCCA 5202 >seq15048 Length=4365 Score = 84.2 bits (92), Expect = 2e-11 Identities = 270/419 (64%), Gaps = 0/419 (0%) Strand=Plus/Plus Query 148257 TGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAAC 148316 || || ||||| ||||| ||||| | | || |||||| || | || |||| || Sbjct 1628 TGGTTAACCACTTGAAATTCGCCCGACAATACTCGCCGCGTGTAAATATTTGACGTATAC 1687 Query 148317 GGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCT 148376 |||||||| || ||||| || ||||||||||||||||| | ||| || ||||| || Sbjct 1688 GGTTCAAAAGATTCGTTATTTCCCAAAATCTGCGCGGTGGATGCTGTTGGCATTGGTGCC 1747 Query 148377 ACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCC 148436 || || || ||||| | | ||| || |||||||| || | | | ||| ||| Sbjct 1748 ACAAGTAGAGAGTTCCTTATACCATATTTCTTTATTTTATTTTTTAAATCAATCCAATCC 1807 Query 148437 CAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGG 148496 || | | || || || |||||| || |||||||| || || ||| |||| Sbjct 1808 CACAAATTTGTAGGAGTTACTCCCCACATATCATACTGCAGTATTCCCTTGCTGACGGGA 1867 Query 148497 CTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGC 148556 || || || || | || ||||| | ||||| || || || ||||| | Sbjct 1868 CTTCCGTCATATGTTTCATATGGTCCAAATTTTTCTGCCAGCTCACAACTTGCCTCCAAT 1927 Query 148557 GCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTTTCG 148616 ||||| | ||||| || || |||||| | || | || ||| ||| ||||| Sbjct 1928 GCGCCAAAATAAATTGTTTCAAAGATTTGCTTATTCAAAAGAAACGCGTTCTCACTTTCA 1987 Query 148617 TACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGG 148675 || || | || | ||| |||||||| || || || || || | ||||| || Sbjct 1988 TAAGGGTATCTCATTAAAATAAAAGCGTCGGCCAGCCCTTGAACACCAATACCAATAGG 2046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483220385821840