Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq15048 190 5e-43 >seq15048 Length=4365 Score = 190 bits (210), Expect = 5e-43 Identities = 529/803 (66%), Gaps = 19/803 (2%) Strand=Plus/Minus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 |||||||| || ||||| |||||||| |||||||| | |||| ||| | ||| | Sbjct 3111 TATTTTGGATTTAAAACACTTGAACGGTCTTATTTATTGAAAATCAACGGCAAAATCGCT 3052 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 ||| | ||||| |||||||| | | || | || ||||||||||| ||||||| | Sbjct 3051 GAAAGACCTCAGCACATGTTGATGAGGGTGTCTATAGGTATTCATGGTGATGATATAGAT 2992 Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATT-----CATGCTACTC 110478 | | |||||| || | ||| || ||||| | || ||||| | | Sbjct 2991 TCCGCAATTGAAACCTACAAC-TATCT-GTCG---GAAAGATTTTTTACGCATGCATCAC 2937 Query 110479 CTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAA 110538 | || || ||| || | ||| | | || ||| | | |||||||| || || || Sbjct 2936 CGACACTTTTTGCTGCTGCAACAATTCGACCGCAACTTTCATCTTGCTTCCTACTTACAA 2877 Query 110539 TTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTA 110598 | | ||||| ||||||||||||| | | | || || || ||| | || |||| Sbjct 2876 TGGTTGCAGATTCAATTGAAGGTATTTTTAAATCAGTTGAACAATGCGCTATGATATCTA 2817 Query 110599 AAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCG 110658 || ||||||| ||||| || | |||||| || || | ||||| || ||| Sbjct 2816 AATCAGCTGGAGGTATTGGAATAAATGTTCATTGCATACGAGCTAAAGGCACATCTATAT 2757 Query 110659 CAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTG 110718 || | | || || |||| | || || || |||||| ||||||| |||||| | | Sbjct 2756 CAGGAACTAATGGAACTTCTAACGGCCTGGTGCCAATGCTAAGAGTTTTCAACAATGTGG 2697 Query 110719 CAAAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAAC 110775 | || || | ||||| || || || ||| | ||||| ||||| | || | Sbjct 2696 CCCGCTACGTTGACCAAGGAGGCGGAAAAAGGCCTGGAGCTTTTGCAATCTACTTAGAGC 2637 Query 110776 CTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAAC 110835 ||||||| || ||||| ||||| || || || | ||||| || ||||||| Sbjct 2636 CTTGGCACTCTGATATTTTTGAGTTTTTGGATTTAAAGAAAAACACGGGCAAGGAAGAAC 2577 Query 110836 AAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTC 110895 | ||||| ||||||||||||||||| |||||||| | ||||| || |||||||| ||| Sbjct 2576 ATAGAGCTCGTGATTTATTTTATGCTTTGTGGATTCCCGATTTGTTTATGAAACGAGTTG 2517 Query 110896 AAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTAT 110955 ||| || | ||||| |||||||| ||||| | |||||| | ||| || | Sbjct 2516 AAGCTAACGAAGATTGGTCCCTTATGTGCCCTCACAAGTGTCCTGGCTTGCATGAAGTTT 2457 Query 110956 ATGGAAAAGAGTTTGAAGACCTT-TACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAA 111014 || || ||||| |||||| || ||||||||||| ||||| || | || | | Sbjct 2456 GGGGTTCGGAATTTGA-GACCTTGTATGAAAAATATGAGAAAGAGGG--ACGCGCGAATA 2400 Query 111015 CAAA--TTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAA 111072 ||| | ||| || |||||||| || | || ||||||| ||||| || | Sbjct 2399 GAAAAGTAAAAGCCCAGTCCCTTTGGTTTGCGATTATAGAGGCACAAGTGGAAACAGGTA 2340 Query 111073 CTCCTTATATTTTGTATAAAGAT 111095 | || ||||| | || |||||| Sbjct 2339 CCCCATATATGCTATACAAAGAT 2317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186308476510526