Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_024794.1 Length=167318 Score E Sequences producing significant alignments: (Bits) Value seq3187 140 3e-28 seq27670 109 6e-19 >seq3187 Length=10884 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 141903 CCGTAGTCCATATGTCGAATACGGTTTTCATCCACACCTTTGTTATTTTTCAGAACTAAT 141962 |||||||||||||| |||| ||||| | || || || ||| |||||||| ||||| Sbjct 7531 CCGTAGTCCATATGGCGAACTCGGTTACCTTCAACCCCGCGGTTGTTTTTCAGGACTAAC 7590 Query 141963 AGGTTCTCTACTTCTAAGTGCCACATCGGATAATACGCTGTAGCAGCACCGCCGCGAATA 142022 ||| | || ||||| | |||||| || || ||| | ||||||||||| || || | | Sbjct 7591 AGGCTTTCAACTTCAAGGTGCCAAATTGGGTAAAATAAGGTAGCAGCACCACCACGGACA 7650 Query 142023 CCACCTTGAGAACAAGATTTTACTGCAGTTTGGAAATGTTTCCAGAATGGAATAACACCT 142082 ||||||||||| |||||||| || ||||| ||||| || || |||| |||||| ||| Sbjct 7651 CCACCTTGAGAGCAAGATTTAACCGCAGTCTGGAAGTGCTTGTAGAACGGAATACAGCCT 7710 Query 142083 GTATGTCGAACTTCACC 142099 || || | ||||||| Sbjct 7711 GTGTGGAAAGCTTCACC 7727 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 140106 TCATCATAATATTTGCCGATTGATTCCGCACGTTTCATAATTGCTTCATCTAATACAATC 140165 ||||||||||| ||| || ||||||||| | |||| |||||| | || || Sbjct 5642 TCATCATAATAACCAGAGATATCTTTCGCACGTTTTAAAATTTCTTCATTTTCAACGATA 5701 Query 140166 TCATCAAATACCTTCGATGGATCAGTATAAAGATTTCGCATAATATGAGTATATGAACGA 140225 || ||||| | ||| || ||| | | ||| || ||||||||||| |||||||| Sbjct 5702 TCGTCAAAAATAATCGCCGGGTCATTCACGATATTACGGATAATATGAGTGTATGAACGT 5761 Query 140226 GAGTGAATAGTTTCACTGAATGTCCATGTAGCAACCCATGTATC 140269 ||||| || |||||| ||||| |||||| | ||||| || || Sbjct 5762 GAGTGGATGGTTTCAGAGAATGCCCATGTTTCCACCCAGGTTTC 5805 >seq27670 Length=3875 Score = 109 bits (120), Expect = 6e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 61291 GTAAAGGTACGAGCGATAACGTCGCGCTGTTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 61350 || || ||||||| |||||||| |||||||||| |||||| |||||||| || ||| Sbjct 1473 GTGAAAGTACGAGTAATAACGTCTTGCTGTTGTTCTTTAGTCAGTGAGTTAAAACGCACT 1532 Query 61351 GCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 61410 ||||| || ||||||||||| |||||||| |||||||| || || | | | || ||| Sbjct 1533 GCATAACCTGATACACGGATAGTCAGCTGTGGATATTTCTCTGGGTTTTCCATCGCTTCT 1592 Query 61411 TCCAGAGTTTCACGACGCAGAACGT 61435 ||| ||||||| || ||||| Sbjct 1593 AACAGCATTTCACGGTTCATAACGT 1617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535067682314080