Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_025414.1 Length=178171 Score E Sequences producing significant alignments: (Bits) Value seq3187 143 3e-29 seq27670 93.3 5e-14 >seq3187 Length=10884 Score = 143 bits (158), Expect = 3e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 41365 TGGTGGTGAAGCAGTACATACAGGCGTGATCCCGTTCTGGAAACATATTCAGACAGCGGT 41424 ||| |||||||| | || |||||| || ||||||| || || | ||||| ||||| Sbjct 7731 TGGCGGTGAAGCTTTCCACACAGGCTGTATTCCGTTCTACAAGCACTTCCAGACTGCGGT 7672 Query 41425 TAAATCCTGTTCACAAGGTGGCGTTCGTGGTGGTGCTGCAACGTTGTATTATCCGATCTG 41484 |||||| || || |||||||| || |||||||||||||| || || | ||| || || || Sbjct 7671 TAAATCTTGCTCTCAAGGTGGTGTCCGTGGTGGTGCTGCTACCTTATTTTACCCAATTTG 7612 Query 41485 GCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGTGTTGAGAATAACCG 41544 ||| | |||||||||| |||| | || |||||||||||| || ||||| |||||| Sbjct 7611 GCACCTTGAAGTTGAAAGCCTGTTAGTCCTGAAAAACAACCGCGGGGTTGAAGGTAACCG 7552 Query 41545 CATTCGTCACCTGGATTATGGCGTTCA 41571 |||| || |||| || || || || Sbjct 7551 AGTTCGCCATATGGACTACGGTGTGCA 7525 >seq27670 Length=3875 Score = 93.3 bits (102), Expect = 5e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 51057 CGCGAAACCCTGAAAGATGCTGTGAAACATCCTGAGAAGTACCCACAGTTAACGATCCGC 51116 || |||| ||| ||| || || || | || ||||| || |||||| | || ||||| Sbjct 1606 CGTGAAATGCTGTTAGAAGCGATGGAAAACCCAGAGAAATATCCACAGCTGACTATCCGT 1547 Query 51117 GTTTCAGGTTATGCAGTTCGCTTTAATGCACTGACTCCAGAACAACAGCGCGACGTTAT 51175 || |||||||||||||| || ||||| |||||||| ||||||||||| |||||||| Sbjct 1546 GTATCAGGTTATGCAGTGCGTTTTAACTCACTGACTAAAGAACAACAGCAAGACGTTAT 1488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569782884290160