Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_025437.1 Length=169062 Score E Sequences producing significant alignments: (Bits) Value seq3187 141 1e-28 seq27670 109 6e-19 >seq3187 Length=10884 Score = 141 bits (156), Expect = 1e-28 Identities = 153/199 (77%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 142382 CCGTAGTCCATATGTCTAATACGGTTTTCATCCACGCCTTTGTTATTTTTCAGAACCAAC 142441 |||||||||||||| | || ||||| | || || || ||| |||||||| || ||| Sbjct 7531 CCGTAGTCCATATGGCGAACTCGGTTACCTTCAACCCCGCGGTTGTTTTTCAGGACTAAC 7590 Query 142442 AGGTTCTCTACTTCTAAGTGCCACATCGGATAATACGCTGTAGCAGCACCACCACGAATA 142501 ||| | || ||||| | |||||| || || ||| | ||||||||||||||||| | | Sbjct 7591 AGGCTTTCAACTTCAAGGTGCCAAATTGGGTAAAATAAGGTAGCAGCACCACCACGGACA 7650 Query 142502 CCACCTTGAGAACAAGATTTTACTGCAGTTTGGAAATGTTTCCAGAATGGAATAACACCC 142561 ||||||||||| |||||||| || ||||| ||||| || || |||| ||||| ||| || Sbjct 7651 CCACCTTGAGAGCAAGATTTAACCGCAGTCTGGAAGTGCTTGTAGAACGGAAT-ACAGCC 7709 Query 142562 GTATGTCGAA--CTTCACC 142578 | ||| ||| ||||||| Sbjct 7710 -TGTGTGGAAAGCTTCACC 7727 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 140589 TCATCATAATATTTGCCGATTGATTCCGCACGTTTCATAATTGCTTCATCTAATACAATC 140648 ||||||||||| ||| || ||||||||| | |||| |||||| | || || Sbjct 5642 TCATCATAATAACCAGAGATATCTTTCGCACGTTTTAAAATTTCTTCATTTTCAACGATA 5701 Query 140649 TCATCAAATACCTTCGATGGATCAGTATAAAGATTTCGCATGATATGAGTATATGAACGA 140708 || ||||| | ||| || ||| | | ||| || || |||||||| |||||||| Sbjct 5702 TCGTCAAAAATAATCGCCGGGTCATTCACGATATTACGGATAATATGAGTGTATGAACGT 5761 Query 140709 GAGTGAATGGTTTCACTGAATGTCCATGTAGCAACCCATGTATC 140752 ||||| ||||||||| ||||| |||||| | ||||| || || Sbjct 5762 GAGTGGATGGTTTCAGAGAATGCCCATGTTTCCACCCAGGTTTC 5805 >seq27670 Length=3875 Score = 109 bits (120), Expect = 6e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 62342 GTAAAGGTACGAGCGATAACGTCACGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 62401 || || ||||||| |||||||| |||| ||||| |||||| |||||||| || ||| Sbjct 1473 GTGAAAGTACGAGTAATAACGTCTTGCTGTTGTTCTTTAGTCAGTGAGTTAAAACGCACT 1532 Query 62402 GCATAACCGGATACACGGATGGTCAACTGCGGATATTTTTCTGGATGCTTAACTGCATCT 62461 |||||||| ||||||||||| |||| ||| |||||||| ||||| | | | || ||| Sbjct 1533 GCATAACCTGATACACGGATAGTCAGCTGTGGATATTTCTCTGGGTTTTCCATCGCTTCT 1592 Query 62462 TCCAGAGTTTCACGACGCAGAACGT 62486 ||| ||||||| || ||||| Sbjct 1593 AACAGCATTTCACGGTTCATAACGT 1617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540646168653920