Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_025449.1 Length=166783 Score E Sequences producing significant alignments: (Bits) Value seq27670 109 6e-19 seq16859 86.0 7e-12 seq3187 84.2 2e-11 >seq27670 Length=3875 Score = 109 bits (120), Expect = 6e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 60238 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 60297 || || ||||||| |||||||| |||| ||||| |||||| |||||||| || ||| Sbjct 1473 GTGAAAGTACGAGTAATAACGTCTTGCTGTTGTTCTTTAGTCAGTGAGTTAAAACGCACT 1532 Query 60298 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 60357 |||||||| ||||||||||| |||||||| |||||||| || || | | | || ||| Sbjct 1533 GCATAACCTGATACACGGATAGTCAGCTGTGGATATTTCTCTGGGTTTTCCATCGCTTCT 1592 Query 60358 TCCAGAGTTTCACGACGCAGAACGT 60382 ||| ||||||| || ||||| Sbjct 1593 AACAGCATTTCACGGTTCATAACGT 1617 >seq16859 Length=8331 Score = 86.0 bits (94), Expect = 7e-12 Identities = 159/231 (69%), Gaps = 7/231 (3%) Strand=Plus/Minus Query 56359 TAATCGCTTTTTTGCCACAATGACAAACTGCTTTTAGTTCAATAAGTTTATCTGCAATCG 56418 || ||||||| |||||| | |||||| | ||| || |||| ||| ||||| || || Sbjct 6089 TATTCGCTTTACGGCCACAGTAACAAACGGTTTTAAGCTCAACAAGCTTATCAGCCCACG 6030 Query 56419 CCAAAAGTTCTTTAGAACCTTCAAATAATTTTCCAGCGAAATCAGTCCTTAGTCCATAAG 56478 | | | | || | ||||||||||| | || || || || || |||| |||||| Sbjct 6029 CAAGTAAATATTGACTCCCTTCAAATAACTGCCCTGCAAAGTCTGTTCTTAAGCCATAAC 5970 Query 56479 CCATAACAGGAACATTATATGTATCAACAATTCGGCTTAATTGATGCACCTGTTTAGTTT 56538 | |||||| | || | |||||||||| || |||||| | || |||| |||| Sbjct 5969 ATAAAACAGGGATATCACTGTTATCAACAATATCGCATAATTGCTCTACTTGTT--GTTT 5912 Query 56539 --TTAAAAACTGGGCTTCATCTACAAATACACAATGAATATCTTTTTGTGC 56587 ||||||| || ||||| | || |||||||| | |||||||||| Sbjct 5911 AGTTAAAAATTGACACTCATCAATAAGAACACAATGTA---CTTTTTGTGC 5864 >seq3187 Length=10884 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/150 (75%), Gaps = 7/150 (5%) Strand=Plus/Plus Query 136530 ATATATTGAGTGCCT-TTAAG-GTGAAGCTGCTCATCACGTGCAATAAACTTCATAATCT 136587 |||| |||||||||| ||||| || ||||| |||||||||||||| | ||| ||||| | Sbjct 5375 ATATGTTGAGTGCCTGTTAAGTGTAAAGCT--TCATCACGTGCAATCAGCTTGATAATTT 5432 Query 136588 TGGCATTACCTTCCATGATTTCCATGTTCTTATGGAAGTTAAAGGTACATGCAAAAGATA 136647 | |||||||||||||| | | || ||||| ||| || | ||| ||||| | Sbjct 5433 TAGCATTACCTTCCATTAGCT-CACGTTCT--GCGAATGCGAATGAACAGGCAAAGCTGA 5489 Query 136648 CATAAAAACGAATAGCTTCTAAGGCATTAA 136677 ||||||| || || ||||| | || |||| Sbjct 5490 CATAAAATCGGATTGCTTCCAGTGCGTTAA 5519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 533356392066480