Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq31959 114 1e-20 seq3053 95.1 1e-14 >seq31959 Length=2257 Score = 114 bits (126), Expect = 1e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 51732 GCCTCGACATTGCCCAAGTCGCCGACGTGGCGCATCGCCGCGTTCGGAGCGCCGTGGTCG 51791 ||||||| ||||||| |||||||| |||||| | | || | || |||||||| || Sbjct 786 GCCTCGATGTTGCCCAGGTCGCCGAGATGGCGCTCCTCGTCGGTGGGGGCGCCGTGCTCC 845 Query 51792 CTGCCGGTGGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGAAT 51851 |||| ||||||||||| ||| || || ||||||||||| || |||||||||| Sbjct 846 TTGCCCAGCGGGTTGAAGTGGGGGCCGGCGGAGATGCAGCCGTTGGTGTTGTCGCCGAAC 905 Query 51852 TCGTGCACGTGGAATCCGTGCAGGCC 51877 |||||||| ||||| |||||||| || Sbjct 906 TCGTGCACATGGAAGCCGTGCAGCCC 931 >seq3053 Length=25279 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||| ||||| ||||||| ||||||||||| || ||| || ||||| |||||| Sbjct 10172 AACCAGATGTAATGTTGACTCCTTTTGAATGTTATAATCGGACAATGTACGTCCATCTTC 10113 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | || || || | | | |||||||| |||||||||||||| || || ||||| || Sbjct 10112 TAATTGCTTTCCAGCAAAAATTAGACGTTGTTGATCTGGAGGAATTCCCTCTTTGTCCTG 10053 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| || ||||| | || | || || | || || || || | || | || || Sbjct 10052 AATCTTGGCTTTCACATTCTCGATTGTGTCCGAAGGTTCGACCTCTAAGGTGATGGTCTT 9993 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || ||||||| || |||||||| Sbjct 9992 CCCCGTGAGGGTTTTTACAAAGATCTGCAT 9963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476413608911760