Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_026014.1 Length=35814 Score E Sequences producing significant alignments: (Bits) Value seq14482 120 7e-23 seq13268 89.7 1e-13 seq21062 87.8 4e-13 seq3741 84.2 5e-12 seq25730 80.6 6e-11 >seq14482 Length=29238 Score = 120 bits (132), Expect = 7e-23 Identities = 212/308 (69%), Gaps = 6/308 (2%) Strand=Plus/Minus Query 33606 GTTGATGAAATCGCTCACGAAGGACCGCCGGACAGGCTGACTGTTTCAGCCAGAAGCGCA 33665 ||||||||||| |||| ||| || || ||| | || || | ||| | ||||| Sbjct 29232 GTTGATGAAATTAGTCACTCAGGCCCTCCAGACCAAATCACAGTAACCGCCCGTAGCGCG 29173 Query 33666 GATTTTCGGGATGAATTTAACGTTAAACGTGAGGTGTCCTGGCATGATGTGACCGT---T 33722 || |||||| | || |||||||| ||||| || |||||| ||| | | || | Sbjct 29172 GACTTTCGGCAAGATTTTAACGTCAAACGGGAATATAGCTGGCACGATATCAAAGTCCCT 29113 Query 33723 GAGCGTGTGGTATCCGCCATCGCTCATCGGTATGGTCTGAAACCGCAAATCAGCGAAATG 33782 || |||||| ||| || || || ||| || ||||| | | ||| || Sbjct 29112 GA---TGTGGTGAGCGCGATAGCGGGGCGTTATAACCTAAAACCCGCAGTGAGCAAACAA 29056 Query 33783 CTGATGGATATCGAAATCGACCACGCCGACCAGACCGAAGAAAGCGACATGTCCTTCCTT 33842 |||| | || ||||| |||||||||||||||||| | |||||||| || ||| | Sbjct 29055 TTGATACACATTGAAATTGACCACGCCGACCAGACCAATGAAAGCGATATCAGCTTTTTA 28996 Query 33843 ACGCGCATGGCGGAAATGCTGGGCGCAATCACCACGGTAAAAAGCGGTAATCTGTTATTC 33902 ||||||||||| |||||||| ||||| || |||| | |||| |||| | | ||||| Sbjct 28995 ACGCGCATGGCTGAAATGCTTGGCGCGATAGCCACCATTAAAAATGGTAGTTTATTATTT 28936 Query 33903 ATCATGCC 33910 ||| |||| Sbjct 28935 ATCGTGCC 28928 >seq13268 Length=3871 Score = 89.7 bits (98), Expect = 1e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 139 GGATTAAAGCGCACAGCATCCTGTAGATAATCCGGTGCAAAATGGGCATAAGTCATCGTC 198 ||||| ||| | |||| || | |||||| || || || || ||||||| ||| ||| Sbjct 3061 GGATTTAAGGTAATAGCAAATTGCAAATAATCAGGGGCTAAGTGAGCATAAGCCATTGTC 3120 Query 199 TGCTGAATAGTGCTATGTCCAAGTATTCTCTGCAAAGTGATGATATTCCCACCATTAATC 258 || |||||| || || || | |||| |||| || | ||||| |||||||| ||| Sbjct 3121 TGTTGAATATTGGCGTGACCTAATATTTGTTGCAGAGCAACAATATTGCCACCATTCATC 3180 Query 259 ATGAAGTGAGTGGCAAAGGTATGCCGTAAAACATGTATCGACTGCCCTTCAGGAAGATCA 318 ||||||||| | || || ||||||| | ||| || | | || || || || | |||| Sbjct 3181 ATGAAGTGACTTGCGAAAGTATGCCTAAGAACGTGCGTAGCTTGACCGTCTGGCAAATCA 3240 Query 319 GG 320 || Sbjct 3241 GG 3242 >seq21062 Length=2553 Score = 87.8 bits (96), Expect = 4e-13 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 154 GCATCCTGTAGATAATCCGGTGCAAAATGGGCATAAGTCATCGTCTGCTGAATAGTGCTA 213 ||||| || ||| | ||||||||||| || || || |||| || ||||| | || Sbjct 1465 GCATCTTGAAGAAAGTCCGGTGCAAAGTGTGCGTAGGTCAGTGTTTGCTGTAATGTTGAG 1524 Query 214 TGTCCAAGTATTCTCTGCAAAGTGATGATATTCCCACCATTAATCATGAAGTGAGTGGCA 273 || || | || ||||||||||| || ||| | || ||||| ||||| || || || || Sbjct 1525 TGACCTAAGATCCTCTGCAAAGTAATAATACTGCCTCCATTCATCATAAAATGGGTTGCG 1584 Query 274 AAGGTATGCCGTAAAACATGTATCGACTGCCCTTCAGGAAGATCAGGC 321 || ||||||||||| | || | | || |||| || | ||||||| Sbjct 1585 AAAGTATGCCGTAATGCGTGCGTGGCTTGGCCTTGTGGCATATCAGGC 1632 >seq3741 Length=5774 Score = 84.2 bits (92), Expect = 5e-12 Identities = 212/321 (66%), Gaps = 6/321 (2%) Strand=Plus/Plus Query 11372 ATCTAACAGTGCGTAAGGGTTAAAGCGGATCACCTCTTCGCCAAGCCAGTCATTGATGTG 11431 ||| | || ||| || | |||||||||||||| || | || ||| ||| || || Sbjct 3479 ATCCAGCAATGCATATTGTTTAAAGCGGATCACTTCAACACCTAGCATGTCGTTAATTGA 3538 Query 11432 CTTCATGGCCTCCATGACGGGCATCAGCTCGTTAATTGCGTAAACCCGCGCGGCCTTCTC 11491 |||||| ||||| | || | | ||| || | | | ||| |||||||| || Sbjct 3539 TTTCATGCTTTCCATCAGCGGTAATAACTCATTGAACCAGAACACCATTGCGGCCTTTTC 3598 Query 11492 CACATCACCAAACGCACTTTTTTCGCCC---GGCATCGCCCCCATCAGTTGCGGCGGAAC 11548 |||||||||| ||| | ||| || || ||||||||| || || || | Sbjct 3599 AACATCACCAAG---ACTGCCTGAGCCTTGTGGGATGATCCCCATCAGCTGTGGTGGTAT 3655 Query 11549 GCGGTGCGCAGCCAGCACATCATCACGGGATGCCGCCTTAACATTCATGAACTCATCCTT 11608 |||||| ||||| || |||||| || | | | || | | | ||||| || || Sbjct 3656 CCGGTGCATAGCCAACAAATCATCGCGCGTGGTGTCTTTGATACCGACAAACTCGTCTTT 3715 Query 11609 TGCGGTGATCTGCTGGAACGGCAAAATTTGCACCCCCTCTTTGCCCCCGTTGGGCGCATG 11668 |||| |||| || ||| ||||||||||| | ||| || ||||| || |||| |||| Sbjct 3716 TGCGCTGATTTGTGAGAATGGCAAAATTTGAATCCCATCCTTGCCACCATTGGCGGCATA 3775 Query 11669 AATGAGCACGTTTTTAAACGC 11689 || | | |||||||| || Sbjct 3776 AACAAAGATATTTTTAAATGC 3796 >seq25730 Length=3144 Score = 80.6 bits (88), Expect = 6e-11 Identities = 92/124 (74%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 16013 GCCGTTCTTCCCGGATGCAACGATGCTGATCACCTCGTTCAACAACCTGTCAATTTACTG 16072 ||| |||||||| |||| | | |||||||| |||| || |||||||| | || || Sbjct 1796 GCCATTCTTCCCTGATGGCGCCGTATTGATCACCACGTTTAAAAACCTGTCGGTGTATTG 1855 Query 16073 GCAGAAAGGAACAATGCGTCGCCTGATGAAAGACGAGCCGGAATACAACCGCATCGCCAC 16132 ||||||||| | | || || |||| ||||| || |||||||| |||||| | || || Sbjct 1856 GCAGAAAGGTAAATACCGCCGTGTGATCAAAGATGAACCGGAATATAACCGCGTGGCGAC 1915 Query 16133 CTAC 16136 ||| Sbjct 1916 TTAC 1919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114438111220992