Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq7146 230 3e-54 seq3100 95.1 2e-13 >seq7146 Length=6253 Score = 230 bits (254), Expect = 3e-54 Identities = 311/428 (73%), Gaps = 9/428 (2%) Strand=Plus/Plus Query 1455885 TTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCT 1455944 ||||| |||||| || ||||| || ||||||| ||||||||| || |||||| || Sbjct 5310 TTCATTTCGCACGTGCTGGCCTTCTT-CGCCGCCTCCGATGGCATTGTCAACGAGAATCT 5368 Query 1455945 GGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCA 1456004 || | || || | ||||||| ||| || ||||||| || | || ||||| ||||| Sbjct 5369 GGTGGAGCGTTTCAGCCAAGAGGTGCAAGTGACAGAGGCGCGCTGCTTCTACGGCTTCCA 5428 Query 1456005 GATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAA 1456064 ||||||||| || || ||||||| || | ||| | ||||| ||||||||| ||| Sbjct 5429 GATCGCCATGGAGAATGTCCACTCGGAGATGTACAGCATTCTGATTGACACCTACATCAG 5488 Query 1456065 GGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAA 1456124 ||| ||| || |||| ||| || || |||| || ||||| |||| | ||| Sbjct 5489 GGATCCGCATCAGCGGGACTTCCTGTTCAATGCGGTCGAAACATTGCCGGCGGTCAAGAA 5548 Query 1456125 AAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAG--GGCCTCGACACTTTGCCGAGC 1456182 |||||||||||||||||| |||||| | | || |||| |||| | |||| Sbjct 5549 GAAGGCCGACTGGGCGATGGCATGGATCTCCTCGAAGTCGGCC----AACTTCGGTGAGC 5604 Query 1456183 GGCTCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCT 1456241 | || | | || |||| |||||||||||| || ||||||||||||||| | | |||| Sbjct 5605 GCATCATTGCGTTCGCCGCCGTCGAGGGCATTTTCTTCTCGGGCAGTTTCGCCTCGATCT 5664 Query 1456242 TTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGT 1456301 | ||||| ||||||||||||||||||||||| | || ||| |||||| || ||| Sbjct 5665 TCTGGCTGAAGAAGCGCGGCCTCATGCCCGG-CCTCACCTTCTCCAACGAGTTGATCTCA 5723 Query 1456302 CGCGACGA 1456309 |||||||| Sbjct 5724 CGCGACGA 5731 >seq3100 Length=5382 Score = 95.1 bits (104), Expect = 2e-13 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 1818069 ATGGTAAAGGGCGTCACGCGCTCGGGAAAGGTGAGCGTCTTGACGATCTCATAGGGCACG 1818128 ||| | ||||| || || ||||||| ||||| || ||| | | ||| | |||||| Sbjct 3196 ATGTTGAAGGGGGTGACCAGCTCGGGGAAGGTCAGATTCTGGGCAATCGAACGGGGCACT 3255 Query 1818129 CCCACCTCGTCAATGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGCGGTAAAGTTG 1818188 ||||||| || || | | ||| ||||| ||||||| | ||||| | |||| Sbjct 3256 CCCACCTGATCGATACGCAAGTTGGGATCGGGCGTGATGACCGTACGCGCAGAGAAGTCC 3315 Query 1818189 ACGCGCTTGCCCATGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGAACCGCTCC 1818245 || ||||||||||| ||||||||| || | |||||||||||||||| ||| || Sbjct 3316 ACACGCTTGCCCATCAGATTGCCGCGAATGCGTCCCTCCTTGCCCTTGAGGCGCGCC 3372 Score = 86.0 bits (94), Expect = 9e-11 Identities = 112/153 (73%), Gaps = 3/153 (2%) Strand=Plus/Plus Query 1817479 AGGGCGTCCATGACCAGGCCGATGATGGGCTTGTTGGCCTGCGGCGACACGGTCTTGAGG 1817538 |||| |||| || | ||| |||| ||||||||||||||||||| | | | | | | Sbjct 2767 AGGGTGTCCTGCACAATGCCCATGACAGGCTTGTTGGCCTGCGGCGTGATGATTTGGCGC 2826 Query 1817539 GCCACGTTCATGGTGTGCGTCACCTCGGCGCGCGCGTCTCA--GACTGGGGCACATGGAG 1817596 | | | | | ||| | ||| |||||||||| || || ||||| ||||| || | Sbjct 2827 GGCGTGATGTGGATGTTCTCCACTTCGGCGCGCGTCTC-CATGGACTGCGGCACGTGCAA 2885 Query 1817597 GTTCATCTCGTCGCCGTCAAAGTCGGCATTGTA 1817629 |||||||||||||||||| || ||||| ||||| Sbjct 2886 GTTCATCTCGTCGCCGTCGAAATCGGCGTTGTA 2918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7174612278340892