Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq3053 105 6e-18 seq5502 93.3 4e-14 >seq3053 Length=25279 Score = 105 bits (116), Expect = 6e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||| |||||| || ||||||||||||||| ||||||| | Sbjct 10189 CCACCACGAAGACGAAGAACCAGATGTAATGTTGACTCCTTTTGAATGTTATAATCGGAC 10130 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || || | ||||| || ||||| || | || || || || | |||| Sbjct 10129 AATGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAATTAGACGTTGTTGATCTGGAGGA 10070 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||| |||||| ||||| |||| | | | | ||||| | ||| ||| Sbjct 10069 ATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTCTCGATTGTGTCCGAAGGTTCGACC 10010 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGTG 35742 || | ||||| || || ||||| | ||||| ||||| ||||||||| |||| Sbjct 10009 TCTAAGGTGATGGTCTTCCCCGTGAGGGTTTTTACAAAGATCTGCATTTTGTG 9957 >seq5502 Length=7310 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 10/198 (5%) Strand=Plus/Plus Query 44117 CACCCATGATCCTTTGTGGAACGCTGCCCAAACACAACTGTTGCGAGAAGGTAAAATGCA 44176 |||||| || | |||||||||| || ||| || ||| |||| || || |||||||| Sbjct 5875 CACCCACGACGATCTGTGGAACGCCGCGCAATTGCAGCTGGTGCGCGAGGGCAAAATGCA 5934 Query 44177 CCAATACATGCGTATGTATTGGTGCAAGAAGATATTGGAGTGGTCGGAAGATGC----GC 44232 | | | |||||||||| ||| ||||| ||| | || ||| | || | || || Sbjct 5935 CGGCTTCCTGCGTATGTACTGGGCGAAGAAAATACTCGAATGGACTGA-GTCGCCGGAGC 5993 Query 44233 AAACCGCGCTCGTTCAT--GCCATCTATCTGAACGACAAGTACAGTTTGGACGGTCGCGA 44290 || ||||| | || |||||| || || ||||||| ||||||||| || ||||| Sbjct 5994 AA---GCGCTGGANAATTCGCCATCCTCCTCAATGACAAGTTCAGTTTGGATGGCCGCGA 6050 Query 44291 CCCCAACGGGTACGTAGG 44308 ||||||||| || || || Sbjct 6051 CCCCAACGGCTATGTGGG 6068 Score = 93.3 bits (102), Expect = 4e-14 Identities = 90/113 (80%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 44305 TAGGATGTATGTGGTCCATTTGCGGTGTCCACGA-CAGGGCGTGGCGAGAGCTACCCATC 44363 |||| || |||||||||||| ||||||| ||||| |||||| |||| |||| | | ||| Sbjct 6197 TAGGCTGCATGTGGTCCATTGGCGGTGTGCACGACCAGGGCTGGGCG-GAGCGAGCGATC 6255 Query 44364 TACGGCAAAGTGCGCTACATGAACTACAACGGTTGCGTCAGAAAGTTTGATGT 44416 | ||||||| | ||||||||||||||| | || ||| | ||||| ||||| Sbjct 6256 TTCGGCAAAATCCGCTACATGAACTACCAGGGGTGCAAGCGGAAGTTCGATGT 6308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450606712243280