Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq7146 93.3 4e-14 seq3053 84.2 2e-11 >seq7146 Length=6253 Score = 93.3 bits (102), Expect = 4e-14 Identities = 224/338 (66%), Gaps = 17/338 (5%) Strand=Plus/Minus Query 21540 CAAACGATCCGCCACGAATTCAATGTATTGACACATGCTGTCGCAATTCATGCCCAACAG 21599 || ||| || ||||||||||| ||||| | |||| | ||| |||||||| | || Sbjct 5927 CAGACGGTCGGCCACGAATTCGATGTACTCGGACATCAGTTTGCAGTTCATGCCGATCAA 5868 Query 21600 ATCGACCGGTAGCGCTTCGGTGAAAAACTCCTTCTCGATAGCCACCGCTTCCTTGATCAT 21659 || |||||| ||||||||||||| ||||||| ||||| ||||||||| | ||| || Sbjct 5867 ATTGACCGGCAGCGCTTCGGTGAGGAACTCCTGTTCGATCTTCACCGCTTCGTCGATGAT 5808 Query 21660 GGCGTGTAT---TTCACCGGCGGACAATTTG-TCTTGAGGCTCGATGTATTTGTTGTAGT 21715 || || ||| |||| | | || | || ||| || | Sbjct 5807 CTCGATGATGCGTTC-GCGGCTGGGACGCTGCACCAGATGCTGGA------------ACA 5761 Query 21716 AGAGACAAGCAAAATTGGTGTGCAATCCCTCGTCGCGCGAAATCAATTCGTTGCTGAACG 21775 || || || |||| |||| ||||||||||| || ||||| |||||| ||| | Sbjct 5760 TCAGGCAGGCGAAATCACAATGCAGGCCCTCGTCGCGTGAGATCAACTCGTTGGAGAAGG 5701 Query 21776 TGAGACCGGGCATTAAACCTCGATTTTTAATGTAAAAAATTGCCGCAAAGCTACCGGaaa 21835 |||| |||||||| | || || || || | | || || | || || || || || | Sbjct 5700 TGAGGCCGGGCATGAGGCCGCGCTTCTTCAGCCAGAAGATCGAGGCGAAACTGCCCGAGA 5641 Query 21836 aaaaCACGCCCTCCACAATGGCGAACGCCACCATGCGC 21873 | || | |||||| || ||||||||| | |||||| Sbjct 5640 AGAAAATGCCCTCGACGGCGGCGAACGCAATGATGCGC 5603 >seq3053 Length=25279 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || || |||| || || |||||||||||||| || ||| | || | || || Sbjct 10171 ACCAGATGTAATGTTGACTCCTTTTGAATGTTATAATCGGACAATGTACGTCCATCTTCT 10112 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 | || || || |||||||| | ||| || ||||| || || || || ||||| || ||| Sbjct 10111 AATTGCTTTCCAGCAAAAATTAGACGTTGTTGATCTGGAGGAATTCCCTCTTTGTCCTGA 10052 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||| || || | |||||| || | ||| || || | || ||||| || Sbjct 10051 ATCTTGGCTTTCACATTCTCGATTGTGTCCGAAGGTTCGACCTCTAAGGTGATGGTCTTC 9992 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCATTTTGT 134718 || || | ||||| || || || |||||||||| Sbjct 9991 CCCGTGAGGGTTTTTACAAAGATCTGCATTTTGT 9958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505188874458320