Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq15048 616 2e-171 >seq15048 Length=4365 Score = 616 bits (682), Expect = 2e-171 Identities = 1256/1850 (68%), Gaps = 22/1850 (1%) Strand=Plus/Plus Query 68394 TGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAA 68453 ||| ||||| || | || || ||||| || ||||| ||||| |||| | |||| Sbjct 1312 TGCTGGTTTAGTTCTAAGGTAATACATTCCAGTTTTTAGACCAGCTTTCCACGCAAAGAA 1371 Query 68454 ATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACT 68513 ||| || ||||| || |||| |||| || | | ||||||||| | || || || Sbjct 1372 ATGAATCGATGTTAACTTCCCATAATTTGGCTCTCCAACATGAATATTAAATGACTGGCT 1431 Query 68514 TTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAG-GA-ATT 68571 ||||||||| || ||||||||||| || |||||| || | | ||| | || ||| Sbjct 1432 TTGATCGATAAATGCTCCTCTATCAGCAGCCATTAAAATTGT--TGATTTAACTGATATT 1489 Query 68572 TCCCAAATAGTCTT--AAAAATCTGTTTGATATCATCTGGAAGGCT--CG-TATTTTGAA 68626 ||||||| ||| || ||| ||| | || | | ||| | || || ||||||||| Sbjct 1490 TCCCAAACAGTTTTGTAAAGATCCCGT--ATGTTTTGTGGTATACTTTCGATATTTTGAA 1547 Query 68627 TGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCG 68686 |||| |||| ||||| ||| || || || | |||| |||||| | | || | Sbjct 1548 TGGAACCACGGCTAGATATTATTTCGTTTTTCATTTGTTCATCCCACAAATCTAGTTCGG 1607 Query 68687 TTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAG 68746 ||| | |||| || | || | ||||| | ||||||||| || || || |||| || | Sbjct 1608 TTAGATCTCTTAGTAAGTGATGGTTAACCACTTGAAATTCGCCCGACAATACTCGCCGCG 1667 Query 68747 TGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTG 68806 |||||||||| ||||| ||||| | |||||| |||||||||| ||| || || || | Sbjct 1668 TGTAAATATTTGACGTATACGGTTCAAAAGATTCGTTATTTCCCAAAATCTGCGCGGTGG 1727 Query 68807 ATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTAT 68866 |||| |||||||| |||||||| | || | || || | ||||| | | | ||||||| Sbjct 1728 ATGCTGTTGGCATTGGTGCCACAAGTAGAGAGTTCCTTATACCATATTTCTTTATTTTAT 1787 Query 68867 CTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTA 68926 ||||| || |||||||||| | || | || || ||| | ||| || || | Sbjct 1788 TTTTTAAATCAATCCAATCCCACAAATTTGTAGGAGTTACTCCCCACATATCATACTGCA 1847 Query 68927 GAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTA 68986 | ||||| || || | ||| | |||||||||||| ||||| | ||| || | Sbjct 1848 GTATTCCCTTGCTGACGGGACTTCCGTCATATGTTTCATATGGTCCAAATTTTTCTGCCA 1907 Query 68987 GTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGAT 69046 | |||||||||||||| ||||| || ||||||||||||| || || | |||||| | | Sbjct 1908 GCTCACAACTTGCCTCCAATGCGCCAAAATAAATTGTTTCAAAGATTTGCTTATTCAAAA 1967 Query 69047 CTTGTGC-TTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCC 69105 || |||| ||| || | || || | | |||||| || || |||| || Sbjct 1968 GAAACGCGTTCTC-ACTTTCATAAGGGTATCTCATTAAAATAAAAGCGTCGGCCAGCCCT 2026 Query 69106 TGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGA 69165 ||||| |||||||| ||||||||||||| | ||| || ||| ||||| || | ||| Sbjct 2027 TGAACACCAATACCAATAGGTCTATGTCGCAAATTCGATTTTTTTGCTTCGGGTAATGGA 2086 Query 69166 TAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTT 69225 |||||||| | ||| || |||||||| | ||| | |||| ||| || || ||| Sbjct 2087 TAATAATTTACATCAATTATTTTATTTAAATTCTTGGTGACTATTTTTGTGACCTCTTTT 2146 Query 69226 AGTTTGAGAAAATCAAATCGTCCATC---TATAACAAACATATTCAGTGCTACAGATGCT 69282 | ||| ||| ||||| | ||| | | ||||||||||| | || | || || Sbjct 2147 AATTTTTTAAAGTCAAAGACTTTATCCGCTGTCACAAACATATTTAAAGCAATCGAAGCG 2206 Query 69283 AGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTA 69342 || || ||||| |||| ||||| | | ||||| | || || |||||||||||| Sbjct 2207 AGGTTGCAAACGGCTATCTCATCTGGTGCCGAATATTCAACAATTTCAGTACATAGATTA 2266 Query 69343 CTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAA 69402 || ||||| ||||| || || ||||| || || || ||| | || || | || ||||| Sbjct 2267 CTGCATTTTATAGTACCGAGGTTTTGTTGGTTGCTTTTTCTATTGCATGAATCTTTGTAT 2326 Query 69403 AGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTA 69462 || ||| | || ||||| ||||| | || | || ||||| | ||||| | | Sbjct 2327 AGCATATATGGGGTACCTGTTTCCACTTGTGCCTCTATAATCGCAAACCAAAGGGACTGG 2386 Query 69463 GCATTTATTACGGTCTTGTAACGCTTC--TCTTTTTCATATTGTGTATATAGCCGTTCGA 69520 || |||| | ||| | ||| || ||||| ||||||| | ||| | || | Sbjct 2387 GCTTTTACTTT--TCTATTCGCGCGTCCCTCTTTCTCATATTTTTCATACAAGGTCTCAA 2444 Query 69521 ATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACA 69580 |||| |||||||| |||| ||| |||||||| | | || ||||| | ||||| Sbjct 2445 ATTCCGAACCCCAAACTTCATGCAAGCCAGGACACTTGTGAGGGCACATAAGGGACCAAT 2504 Query 69581 CATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGAT 69640 | || | | | | ||||||||||||||| | |||||||||||| | ||| ||| | || Sbjct 2505 CTTCGTTAGCTTCAACTCGTTTCATAAACAAATCGGGAATCCACAAAGCATAAAATAAAT 2564 Query 69641 CTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATAT 69700 | | | ||||| |||||| || || || ||||| || | ||| | |||||| | ||||| Sbjct 2565 CACGAGCTCTATGTTCTTCCTTGCCCGTGTTTTTCTTTAAATCCAAAAACTCAAAAATAT 2624 Query 69701 CAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGAT 69760 |||| ||||| || |||| || || || | |||| || | ||| ||||| || | Sbjct 2625 CAGAGTGCCAAGGCTCTAAGTAGATTGCAAAAGCTCCAGGCCTTTTTCCGCCTCCTTGGT 2684 Query 69761 CTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTAC 69820 | | ||| | ||| || || | ||||| ||||| || | | || ||||| | | Sbjct 2685 CAACGTAGCGGGCCACATTGTTGAAAACTCTTAGCATTGGCACCAGGCCGTTAGAAGTTC 2744 Query 69821 CATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTC 69880 |||| ||||| || ||| | | ||| | || || || | || | || || || | Sbjct 2745 CATTAGTTCCTGATATAGATGTGCCTTTAGCTCGTATGCAATGAACATTTATTCCAATAC 2804 Query 69881 CTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGC 69940 |||| || |||||| || | ||| || ||| | || | | | ||||| || || Sbjct 2805 CTCCAGCTGATTTAGATATCATAGCGCATTGTTCAACTGATTTAAAAATACCTTCAATTG 2864 Query 69941 TATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCAT 70000 ||| | | ||| |||| || || || || | ||| | | || ||| | ||| Sbjct 2865 AATCTGCAACCATTGTAAGTAGGAAGCAAGATGAAAGTTGCGGTCGAATTGTTGCAGCAG 2924 Query 70001 TAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAA 70060 ||| | ||| || ||||| || || || || |||| || || ||||| ||||||| Sbjct 2925 CAAAAAGTGTCGGTGATGCATGCGTAAAAAATCTTTCCGACAGATAGTTGTAGGTTTCAA 2984 Query 70061 TAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGA 70119 | || || |||||||| ||| |||||| ||||| | || | ||||||||| |||||| Sbjct 2985 TTGCGGAATCTATATCATCAC-CATGAATACCTATAGACACCCTCATCAACATGTGCTGA 3043 Query 70120 GGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAAC 70179 |||| ||| | |||| || |||||||| | || || ||| || |||||||| Sbjct 3044 GGTCTTTCAGCGATTTTGCCGTTGATTTTCAATAAATAAGACCGTTCAAGTGTTTTAAAT 3103 Query 70180 CCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAG 70229 |||||||| ||||| ||| || | || || || ||| | || || || Sbjct 3104 CCAAAATAATTGTAGCCAAAATCACGATCATATATGATAGCTGAGTTCAG 3153 Score = 84.2 bits (92), Expect = 3e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 70338 AAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGC 70397 |||| |||||| ||||| ||||||||||| || | || || | || |||| |||||| Sbjct 3416 AAATGCTTTTTTAGTTTCTTTGTGTAAATTGGAAACTGCAATACGAGCCGCTAAAATAGC 3475 Query 70398 ATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAATTC 70457 ||||| | ||| | ||| || || || ||||| || ||||| |||||||||| Sbjct 3476 GTAGTCTGCATGATTTGTTGTTAGGCCTGCAGCGATTTCTGCGGCTAAATTATCTAATTC 3535 Query 70458 TATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTT 70496 | ||||||||| || ||| || || | || ||||| Sbjct 3536 TTGAGTTGTAACGCCAGAATAGAGACCATTTATTACTTT 3574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686624024784240