Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_027331.1 Length=170341 Score E Sequences producing significant alignments: (Bits) Value seq3187 123 3e-23 >seq3187 Length=10884 Score = 123 bits (136), Expect = 3e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 143132 TTGAAGACCATAGTCCAGGTGACGAATTCGGTTTTCATCTACGCCTTTGTTGTTCTTAAG 143191 ||| | ||| ||||||| || |||| |||||| | || || || |||||| || || Sbjct 7524 TTGCACACCGTAGTCCATATGGCGAACTCGGTTACCTTCAACCCCGCGGTTGTTTTTCAG 7583 Query 143192 TACGAGGAGATTCTCGACTTCAAGATGCCAAATTGGATAGTACAATGTTGCGGCACCACC 143251 || | || | || |||||||| ||||||||||| || | || || || |||||||| Sbjct 7584 GACTAACAGGCTTTCAACTTCAAGGTGCCAAATTGGGTAAAATAAGGTAGCAGCACCACC 7643 Query 143252 ACGAACTCCGCCTTGGGAACAGGATTTAACTGCAGTTTGGAAGTGTTTCCAGAAAGGAAT 143311 ||| || || ||||| || || |||||||| ||||| |||||||| || |||| ||||| Sbjct 7644 ACGGACACCACCTTGAGAGCAAGATTTAACCGCAGTCTGGAAGTGCTTGTAGAACGGAAT 7703 Query 143312 A 143312 | Sbjct 7704 A 7704 Score = 82.4 bits (90), Expect = 8e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 141289 GTCATCATAATATACACCGATTGATTCGGCACGTTTCATGATTGCTTCATCAAGAACAAT 141348 |||||||||||| || ||| || |||||||| | ||| |||||| ||| || Sbjct 5641 GTCATCATAATAACCAGAGATATCTTTCGCACGTTTTAAAATTTCTTCATTTTCAACGAT 5700 Query 141349 TTCATCAAAGATCTTAGCAGGATCATTGAACAAGTTACGCATGATGTGGGTGTAAGAACG 141408 || ||||| || | || || ||||| | | ||||| || || || ||||| ||||| Sbjct 5701 ATCGTCAAAAATAATCGCCGGGTCATTCACGATATTACGGATAATATGAGTGTATGAACG 5760 Query 141409 AGAGTGAATCGTTTCAGAGAACGTCCAAGT 141438 ||||| || ||||||||||| | ||| || Sbjct 5761 TGAGTGGATGGTTTCAGAGAATGCCCATGT 5790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544737271881360