Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_027339.1 Length=38389 Score E Sequences producing significant alignments: (Bits) Value seq23044 242 9e-60 seq13007 116 9e-22 seq26734 107 5e-19 >seq23044 Length=7840 Score = 242 bits (268), Expect = 9e-60 Identities = 410/588 (70%), Gaps = 12/588 (2%) Strand=Plus/Plus Query 153 GTTTTTACGCCCATCAAAGGTGTTGAGCCACCGGAGTGGTTCGCAGAAGAAGATCTCCCT 212 || |||||||| | |||||||| | |||||| || |||||| | || | || | Sbjct 513 GTATTTACGCCGCTAAAAGGTGTGGCGCCACCTGATTGGTTCACTGAGAACGAGTTAGAG 572 Query 213 CTCGCCACGATCATGTGGCAACTGACAACCAAAGAACTCTGCGGTCAGGGCCTGCTGTGC 272 || |||| |||||||| | || || | ||||||||||| || ||||| | | || Sbjct 573 CTTGCCATTGTCATGTGGGAGCTCACGATAAAAGAACTCTGTGGACAGGGTATTTTATGT 632 Query 273 GTGACTGACCTTGCGGTACTTGAGCGGTGGTGCGTGGCCTATGAGTTCTGGCGACGTGCC 332 | || ||||| || || |||||||| ||||| ||||||||| | | ||||| ||| Sbjct 633 ATTACCGACCTCGCTGTGCTTGAGCGCTGGTGTGTGGCCTATCATATTTGGCGTAATGCA 692 Query 333 GTGAAAAATAT--TGCCAGACAGGGCAACAC-CATCACCGGTGCAATGGGTGGCATGGTT 389 || | |||| ||| |||| | ||| | | | | ||||||| ||||||| | Sbjct 693 GTCATTGATATCATGCGAGACGG---AACTCGCTTAATTGGTGCAACGGGTGGCCCAATA 749 Query 390 AAAAATCCGGAGCTGACCGCCAAGAAAGAACAGGAGTCCGAGATGAGCAGCACGGGGGCA 449 ||||| || || | || | || ||||| || || ||| ||| | || || ||| Sbjct 750 AAAAACCCTGACTTAACGACAAAAAAAGAGCAAGAAAGCGAAATGGATCGTACTGGCGCA 809 Query 450 ATTCTCGGACTCGACCCCAGCAGCCGCCAGCGTCTGATTGGCCTGGCGGGGCAGAAGAAA 509 || | || | || || ||||| |||||||| | |||||| |||| ||||| |||||| Sbjct 810 ATGTTGGGTTTAGATCCGAGCAGTCGCCAGCGGTTAATTGGCATGGCAGGGCAAAAGAAA 869 Query 510 GCCACTAACCCGTTTCTGAAAATCATCGAATCATGAGCCGGAAATCTTACCCCAACGTAA 569 ||| || ||| ||| ||||| ||||||||||| ||||||||||| ||||| | Sbjct 870 CAAGATAATCCATTTATGAGGATCATTTCATCATGAGCCGTAAATCTTACCCAAACGTCA 929 Query 570 ATGCTGCCAATCAGTATGCCCGTGATGTCGTGCGCGGAAAGATTGTGGCCTGCCAGTTTG 629 ||| || ||||| ||||| |||||||| || ||||| ||| |||| || || |||| || Sbjct 930 ATGTGGCAAATCAATATGCGCGTGATGTGGTTCGCGGCAAGGTTGTAGCGTGTCAGTATG 989 Query 630 TGATTCAGGCCTGCCAGCGCCATCTTGATGACCTGATGGCGGA--AAAAAGTAAGT-CGT 686 | ||| | || ||||| || || ||||||| ||||| | | |||| || | Sbjct 990 TCATTGATGCTTGCCAACGACACATTGATGA---TATGGCCCAAGAGAAAGGGCGTAAAT 1046 Query 687 TTCGTTACCGCTTCGACAAGGACCTGGCTGAACGGGCCGCGAAATTTA 734 | || || || || || || ||| |||| |||| ||||| || |||| Sbjct 1047 TCCGCTATCGATTTGATAAAGACTTGGCAGAACAAGCCGCTAAGTTTA 1094 Score = 224 bits (248), Expect = 2e-54 Identities = 307/429 (72%), Gaps = 0/429 (0%) Strand=Plus/Plus Query 1787 ACCGCCGAACGCTTTCAGAAATGGGTGGAAATGGGCGTCCTGACCGTTACCGATGGTGCA 1846 ||||| ||||| ||| ||||||||||||| ||| ||| | || || ||||| Sbjct 2313 ACCGCAGAACGGTTTAGAAAATGGGTGGAAACAGGCCATTTGAAGCTAACTGACGGTGCC 2372 Query 1847 GAGGTGGATTATCGCTACATCCTCGAAGAGGCCAAAGCGGCGAACAAAATCAGCCCGGTC 1906 || | ||||||||| || | || || |||||||| | ||| | | |||| | Sbjct 2373 GAAATTGATTATCGCGTTATTTTAGAGGATGCCAAAGCAGATAACTTGAATAACCCGATT 2432 Query 1907 AGCGAGTCACCCATCGACCCCTTCGGGGCGACCGGGCTCTCACATGACCTTGCTGATGAA 1966 | || || || ||||| ||| || || | || || | || |||||||| Sbjct 2433 AATGAAAGCCCGATTGACCCTCACGGCGCAACAAACTTATCTCACCAACTGGCTGATGAG 2492 Query 1967 GACCTGAATCCCGTCACTATCGTCCAGAACTTCACCAATATGTCCGATCCGATGAAAGAG 2026 | | || || |||| || || || |||| ||| |||||||| || |||||||||||| Sbjct 2493 GGATTAAACCCTATCACCATTGTTCAAAACTACACGAATATGTCTGACCCGATGAAAGAG 2552 Query 2027 CTGGAAGCAGCGATTGAATCGGGACGTTTTCATCATGACGGCAATCCCATCATGACCTGG 2086 || ||||| ||||||| || || || ||||||||||| ||||| || |||||||| ||| Sbjct 2553 CTTGAAGCGGCGATTGCTTCAGGGCGCTTTCATCATGATGGCAACCCAATCATGACATGG 2612 Query 2087 TGTATCGGCAACGTGGTCGGCAAAAACATGCCGGGTAACGATGATGTGGTGAAGCCTGTC 2146 ||||| || || ||||| || ||| | | ||||||||||||||||| || | |||| | Sbjct 2613 TGTATGGGGAATGTGGTGGGTAAATATTTACCGGGTAACGATGATGTCGTTAGGCCTATA 2672 Query 2147 AAGGAGCAGGCGGAAAACAAAATTGACGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGA 2206 || ||||| ||||| |||||||||||||| || ||| | |||||||| | || | Sbjct 2673 AAAGAGCAAAACGAAAATAAAATTGACGGTGCTGTCGCGTTAATTATGGCTATCGGACGG 2732 Query 2207 GCCATGCTG 2215 || |||||| Sbjct 2733 GCGATGCTG 2741 Score = 158 bits (174), Expect = 3e-34 Identities = 179/240 (75%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 1207 TACCACGATGCTTACCGGGATGGGCGCGCGACGTCAGCCACTGATGTGGGCCATCACCAC 1266 ||| || ||| | || |||||||| || |||| ||||| |||||||||| || ||||| Sbjct 1633 TACAACCATGTTAACGGGGATGGGGGCAAGACGGCAGCCGTTGATGTGGGCTATTACCAC 1692 Query 1267 CGCCGGGTACAACATTGAGGGGCCGTGCTACGACAAGCGGCGGGGAGGTATCGAGATGCT 1326 || || || ||||| || ||||| |||||||| ||||| || | || || |||||| | Sbjct 1693 AGCAGGTTATAACATCGAAGGGCCTTGCTACGATAAGCGTCGCGAAGTGATTGAGATGTT 1752 Query 1327 CAACGGTTCGGTACCCAACGATGAACTGTTCGGGATCATCTATACCGTTGACGAAGGCGA 1386 || ||| |||| ||||| || ||| | ||||| | ||||||||||| || || ||||| Sbjct 1753 GAATGGTACGGTTCCCAATGAGGAATTATTCGGTGTTATCTATACCGTGGATGAGGGCGA 1812 Query 1387 TGACTGGACCGACCCGCAGGTGCTGGAAAAAGCCAATCCAAATATTGGCGTGTCGGTTTA 1446 |||||||| || || | |||| | ||||| || || || || || || || || || Sbjct 1813 CGACTGGACAGATCCTAACACGCTGAAGAAAGCTAACCCGAACATGGGGGTTTCAGTCTA 1872 Score = 149 bits (164), Expect = 2e-31 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 878 ACCGAAATCCCCCGTAAGAACGGCAAATCGGCAATCTCTGCCGGTGTTGCCCTGTATTGT 937 ||||| ||||||||||| || || |||||||| || ||||| || || || | |||||| Sbjct 1294 ACCGAGATCCCCCGTAAAAATGGGAAATCGGCTATTTCTGCGGGGGTCGCATTATATTGT 1353 Query 938 TTTGCCTGTGATAACGAGTTTGGCGCGGAAGTGTATTCCGGTGCCACGACAGAGAAACAG 997 ||| | ||||||||||| ||||| || ||||| || || ||||| || || || || || Sbjct 1354 TTTACGTGTGATAACGAATTTGGTGCTGAAGTTTACTCGGGTGCAACAACCGAAAAGCAA 1413 Query 998 GCGTGGGAAGTCTTTCGCCCGGCGCGACTGATGTGTAAACGCACACCCATGCTGACGGAA 1057 ||||||||||| || | || || | | ||||| || || ||||| | || || ||| Sbjct 1414 GCGTGGGAAGTGTTCAGGCCTGCAAAATTAATGTGCAAGCGTACACCGTTACTCACAGAA 1473 Query 1058 GCGTTCGGGATTGAGGTTAACGCCTCAAAC 1087 || || || ||||| || |||||| |||| Sbjct 1474 GCATTTGGTATTGAAGTGAACGCCAAAAAC 1503 >seq13007 Length=9541 Score = 116 bits (128), Expect = 9e-22 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 21372 TGCGTGTTCGGTAAGGTGATTAGGTGCAAGGTGAGCATATCGACGAACCATTTCGATAGA 21431 ||| ||||| || || ||||| || || | |||||||| | | |||||||| || || Sbjct 9392 TGCATGTTCAGTTAGATGATTCGGCGCTAAATGAGCATACCTTCTCACCATTTCTATTGA 9451 Query 21432 CTCCCAGCCTCCCATTTCCTGTAACACTGACAATGGGACTCCGGCTTGAACCAGCCAACT 21491 ||||| ||||||||||| || | | || ||||| ||||||| ||||| |||||||| Sbjct 9452 TTCCCATCCTCCCATTTCTTGAAGTGCAGATAATGGAACTCCGGACTGAACAAGCCAACT 9511 Query 21492 TGCCCAGGTGTGTCTCAAGTCGTGAAATC 21520 ||||| || || |||||||| ||||||| Sbjct 9512 CGCCCAAGTATGCCTCAAGTCATGAAATC 9540 >seq26734 Length=1040 Score = 107 bits (118), Expect = 5e-19 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 1455 TTTTGTTAAGTCAGCAGCAGCGTGCGAAAAATAACGCCCGTCTGGCAAACGTCTTTAAAA 1514 |||| | |||||||| | || || |||| || | || || ||| | |||| |||| Sbjct 764 TTTTAATTAGTCAGCAAAATCGAGCTAAAAGCAATCCGCGCCTAACAAGCATCTTCAAAA 823 Query 1515 CAAAACACCTCAATATCTGGGTGTCGGCGCGTTCGGCGTATTTCAACCTGGTGAGCTGGC 1574 | || || | ||||||||||| || |||||||| ||||||||||| || |||| |||| Sbjct 824 CTAAGCATTTAAATATCTGGGTTTCAGCGCGTTCAGCGTATTTCAATATGTTGAGTTGGC 883 Query 1575 -AGAGCTGCGAGGATAAATCACTGACCCTTGAGCAGTTCGAGGGGCAGCCGTGCATTCTG 1633 |||| || || |||||| | ||||| || || ||| || ||||| | || ||| Sbjct 884 GAGAG-TGTGAAGATAAAACCCTGACACTAGAAATGTTTGAAGGGCAATCTTGTGTTCAA 942 Query 1634 GCCTTTGACCTGGCGCGTAAGCTGGATATGAAC 1666 | | ||| |||| | ||| ||||||||||| Sbjct 943 TCTCTCGACTTGGCCAGAAAGTTGGATATGAAC 975 Score = 95.1 bits (104), Expect = 3e-15 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 743 TTGCCACACACCAAGGGGGAGTGGGCATTCAAGAGGATGCCCATCACACTGGAACCGTGG 802 || || ||||| ||||||||||||||||| || | || || || || || ||||||||| Sbjct 5 TTACCCCACACAAAGGGGGAGTGGGCATTTAAACGAATTCCGATTACGCTCGAACCGTGG 64 Query 803 CAGCTCTTTGTGATCTGCTGTGCGTTTGGCTGGGTCAATAAAGGCTCCCGGCTGCGCCGC 862 || || ||| | | || ||||| ||||||||||| | ||||| | || | || Sbjct 65 CAACTTTTTATCGTTTGTTGTGCATTTGGCTGGGTGCAAAAAGGTACGAAACTTAGGCGA 124 Query 863 TTCAGGGAGGTGTATACCGAAATCCCCCGTAAGAA 897 || | || || || ||||| ||||||||||| || Sbjct 125 TTTCGTGAAGTTTACACCGAGATCCCCCGTAAAAA 159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122674865927892