Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_027353.1 Length=167063 Score E Sequences producing significant alignments: (Bits) Value seq27670 113 5e-20 seq3187 82.4 8e-11 >seq27670 Length=3875 Score = 113 bits (124), Expect = 5e-20 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 61421 GTGAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 61480 ||||| ||||||| |||||||| |||| ||||| |||||| |||||||| || ||| Sbjct 1473 GTGAAAGTACGAGTAATAACGTCTTGCTGTTGTTCTTTAGTCAGTGAGTTAAAACGCACT 1532 Query 61481 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 61540 |||||||| ||||||||||| |||||||| |||||||| || || | | | || ||| Sbjct 1533 GCATAACCTGATACACGGATAGTCAGCTGTGGATATTTCTCTGGGTTTTCCATCGCTTCT 1592 Query 61541 TCCAGAGTTTCACGACGCAGAACGT 61565 ||| ||||||| || ||||| Sbjct 1593 AACAGCATTTCACGGTTCATAACGT 1617 >seq3187 Length=10884 Score = 82.4 bits (90), Expect = 8e-11 Identities = 66/76 (87%), Gaps = 4/76 (5%) Strand=Plus/Plus Query 137468 ATATATTGAGTGCCT-TTAAG-GTGAAGCTGCTCATCACGTGCAATGAACTTCATAATTT 137525 |||| |||||||||| ||||| || ||||| |||||||||||||| | ||| ||||||| Sbjct 5375 ATATGTTGAGTGCCTGTTAAGTGTAAAGCT--TCATCACGTGCAATCAGCTTGATAATTT 5432 Query 137526 TGGCATTACCTTCCAT 137541 | |||||||||||||| Sbjct 5433 TAGCATTACCTTCCAT 5448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534252020607280