Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_027364.1 Length=348113 Score E Sequences producing significant alignments: (Bits) Value seq3187 86.0 1e-11 >seq3187 Length=10884 Score = 86.0 bits (94), Expect = 1e-11 Identities = 382/604 (63%), Gaps = 21/604 (3%) Strand=Plus/Plus Query 259634 AGTTGATTGCACTCAATGTACATAAACTAATCAAACCTTCCCCAGTATTAATGTCATCAA 259693 |||| | |||| || ||||||||| ||| |||||| || ||| || | || | Sbjct 7136 AGTTAAATGCAGACAGTGTACATAATGCAATTTCACCTTCTTCATCATTGATATTATTCA 7195 Query 259694 ATGGCACAGATGGTAGTGCGATTTCTTGACACAAGTTGGATTGTTCAATAGGTGNNNNNN 259753 |||| || ||| || ||||||||| ||||| ||| ||||| | ||| | Sbjct 7196 ATGGTTTAGTTGGCAGCGCGATTTCTAAACACAGGTTAGATTGACGGACAGGGGCAACCT 7255 Query 259754 NNNNNNNNAATGTTGAATGAGTGTTTGCATGGTCAATATTTTGAATATAGATACGCCCAG 259813 |||| ||| || || ||||||| |||||||| || || || || | Sbjct 7256 GTGGGTCAAATGGGCTATGCGTATTACAGTGGTCAACGTTTTGAATGTAAATTCGGCCTG 7315 Query 259814 TTTCAGCACGCTCAG---TCATTAAAGTACTGAATACTTCAACAGCAGGTACGGATTTTT 259870 || |||||||| ||||||| | ||| | ||||| || ||| || Sbjct 7316 TTGACGCACGCTCTTGCATCATTAATGA---GAACAACTCAACTGCTTTAACGCTGGATT 7372 Query 259871 TACGGATGCTTTGGTCAGCTTCGTATTTTTTATATAACTTTTCAAATTCTTTTTGATCAG 259930 | ||||| | | || ||| |||| |||||| ||| ||||| | ||| || | Sbjct 7373 TGCGGATAGTCTCATCTTGTTCATATTGCACATATAAACGTTCGAATTCATCTTGGTCTG 7432 Query 259931 AGCAGAATGCTTCATATAGCCCAGGGACTTCATTAGGACTAAAGAATGTAATATTCT--T 259988 ||||||| ||||| || || ||||| || ||| || || | || || | | | Sbjct 7433 CAAAGAATGCATCATACAGACCTGGGACATCTGAAGGGCTGAATAGGGTGATGTCTTGGT 7492 Query 259989 TCCATCAACCAAACGTTGATACAAAGTTTTGTTTACTTGGAAACAATAGTCCAGTTGACG 260048 || | || |||||||| || | || | || ||||||| || || Sbjct 7493 TC--TTAATCAAACGTTCGTANNNNNNNNNNNAT---TGCACACCGTAGTCCATATGGCG 7547 Query 260049 CACACGGTTAAACTCAGTACCTTTGTTATTTTTAAGGACTACCAAGTTATCAAATTCCAA 260108 || |||||| ||| || ||| ||||| ||||||| || | | |||| ||| | Sbjct 7548 AACTCGGTTACCTTCAACCCCGCGGTTGTTTTTCAGGACTAACAGGCTTTCAACTTCAAG 7607 Query 260109 ATGCCACAATGGGAAGTGAACAGTTGCTGCACCACCACGAACACCACCTTGTGAACAGCT 260168 ||||| | |||| | | || || ||||||||||| ||||||||||| || || Sbjct 7608 GTGCCAAATTGGGTAAAATAAGGTAGCAGCACCACCACGGACACCACCTTGAGAGCAAGA 7667 Query 260169 TTTAA---CAGTCTTAGCAGTAGCTGCAATGAACGGAAT-CAGCCCAGTGTGTACTGCAT 260224 ||||| ||||| | | ||| || | ||||||||| ||| || ||||| | || | Sbjct 7668 TTTAACCGCAGTC-TGGAAGTGCTTGTA--GAACGGAATACAG-CCTGTGTGGAAAGCTT 7723 Query 260225 CACC 260228 |||| Sbjct 7724 CACC 7727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1113357089605968