Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_027398.1 Length=38742 Score E Sequences producing significant alignments: (Bits) Value seq30410 161 2e-35 seq6146 156 1e-33 >seq30410 Length=1798 Score = 161 bits (178), Expect = 2e-35 Identities = 196/267 (73%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 30498 GCTAAGCAACAGTGGATTGAGTTTGAGTATCACAACCTCGACAGGTTTGAGGAAATATTC 30557 ||||| ||||| |||||||||||||||||||||||||| ||| | ||| || || | Sbjct 1531 GCTAAACAACAATGGATTGAGTTTGAGTATCACAACCTAGACCGTTTTACCGAGATTTGG 1590 Query 30558 ATCTCGATGGACGTTGATGATGTTGGTCGTGAAGCCGCAAGGGAAATCGCAAGCCGACTC 30617 | || |||| | ||| || || || || || || |||| || || || | ||||| Sbjct 1591 CTGTCACTGGATGCTGACGAAGTAGGGCGAGAGGCAGCAAAAGAGATTGCTAATCGACTT 1650 Query 30618 GGTGAACATCGTTGCCGTCTTGTTACTCTGCCGTACAAAGACATCAACGAATGCCTGATG 30677 |||||| ||||||| || |||||| | |||||| | ||||| |||||||||||||| | Sbjct 1651 GGTGAATATCGTTGTCGCCTTGTTTCACTGCCGAAAAAAGATATCAACGAATGCCTACAG 1710 Query 30678 AACGGTGTTACCGAGGATGAAATCTGGCAGTACATCGGCACGGCATCCTACTTTGATCCT 30737 || ||||| | || |||||| ||||| | | || ||| |||||||||| ||| Sbjct 1711 GCTGGAATTACCCAAGAAGAAATCATTAAGTACCTTGAAACCGCAACCTACTTTGACCCT 1770 Query 30738 GAAGAACTCTACAGCGCGCGAGAGTTT 30764 || || | | ||| || || |||||| Sbjct 1771 GATGAGTTATGCAGTGCCCGCGAGTTT 1797 >seq6146 Length=11763 Score = 156 bits (172), Expect = 1e-33 Identities = 461/700 (66%), Gaps = 18/700 (3%) Strand=Plus/Minus Query 18898 CAACTAAGATCAGCAATAAGTTGGTGCATGCGGCGTCAGTTGATAGATAGTTGCGCAATT 18957 ||| | | |||||| || | ||||| || |||||||||| || ||| |||| |||| Sbjct 10081 CAATTGAAATCAGCCATTAACTGGTGTATTAGGCGTCAGTTTATTGATGATTGC--AATT 10024 Query 18958 --ATGAGCATCCAGCCAAGGGACTTCGGCTCACGCGCT-GAGGTAGGGGATC--GGGTAC 19012 |||| || || || || | || | ||| ||| | ||||| |||||| Sbjct 10023 TAATGAAGATAAGCCCTAGAGATGTTGGGGAAAAGGCTAGAGTT---GGATCAAGGGTAC 9967 Query 19013 TGTCGTATCACGAACTGGCTAAGATTTGGCTTGCTATTGAAAGAAGCCGTGCTTCTACGT 19072 || | ||| ||||| ||| |||||| || || |||||||| | ||| | || | Sbjct 9966 TGACATATACAGAACTAGCTGCAATTTGGAAGGCAATAGAAAGAAGTAGGGCTGCAACAT 9907 Query 19073 CAAATAAGCTGCTTCATCAGATGCTTATGCTGTGGGGGGCGAGGCTCTCAGAGCTTAGGC 19132 ||||||| || | ||||| ||| | ||||| ||||| || | |||||| | |||| Sbjct 9906 CAAATAAACTATTACATCAAATGATAATGCTTTGGGGTTGCAGAATATCAGAGTTAAGGC 9847 Query 19133 TGGCAACAAAGACAGAATTTGACCTGCTGGACAACGTATGGACCGTACCGAAAGAGCATA 19192 | | || | |||| || || || || || |||||| | || || || |||| | Sbjct 9846 TATCCACTACTTCAGAGTTCGATCTAAATGAAAAAGTATGGTCTGTCCCAGAACAGCACA 9787 Query 19193 GCAAGATGGGCAATGTTATCCGCCGTCCAATCTTCGAACAAATTAAGCCTTTCCTCGATA 19252 |||| | || || || || | || || || ||| | ||| | || || | |||| Sbjct 9786 GCAAAACAGGAAAGGTGATTAGGCGACCTATATTCCCATCTATTGAACCATTATTAGATA 9727 Query 19253 AAGCCATGACAACGTACAATGATGTTCTTTTCCCTGGAGAAGACATAAACAAACCGATCA 19312 |||| ||| || || ||| | | ||||| ||| | |||| || ||||| || | Sbjct 9726 AAGCACTGATTACATATGGTGAAATATTATTCCCCGGACAGAACATTAATAAACCCATGA 9667 Query 19313 GCATCGCTGCAGCCAACCGATTCGTAAATAGAATAAGGGGAGGGATGGATATAGGTTACT 19372 || ||||| ||||| ||| |||||| || ||| | ||| | | | | | Sbjct 9666 CTATAGCTGCTGCCAATAGATACGTAAAAAGGCTAAATGATTCAATGAGGGTTGATGATT 9607 Query 19373 GGCGAACACATGATTTCAGAAGAACGCTTGTTACACGTCTGTCCGA-GATGAATGTCGAG 19431 |||| | || || || |||||||| | | ||| || | || || || | || | Sbjct 9606 GGCGCGCGCACGACTTTAGAAGAACAATCGCTACGCGCTTATCTGAAGAAGGG-GTAGCC 9548 Query 19432 CCTCATGTTACTGAGCGAATGCTCGGTCATGAACTTGGCGGGATAATGTCCGTATACAAT 19491 || ||||| | |||| |||||| || |||||| | | || || ||| | || || ||| Sbjct 9547 CCGCATGTAATTGAGAAAATGCTAGGGCATGAAATGGCTGGAATCATGGCTGTGTATAAT 9488 Query 19492 AAACACGACTGGATAGAGGCTCAGCGCAAA---GCGTATGAGCTTCACGCTGATAAATTG 19548 |||||||||||||| || | | | ||| ||||| || | || || |||||||| Sbjct 9487 AAACACGACTGGAT-TAG--TGAACAAAAAGATGCGTACGAAATACATGCAGATAAATTA 9431 Query 19549 TTCTGGCACATCAGGAGCATTTCTGATTAACGCCACCGTT 19588 ||||||||||| | || | | |||| || | ||||| || Sbjct 9430 TTCTGGCACATTAAGAACTCTGCTGACTAGCACCACCATT 9391 Score = 102 bits (112), Expect = 2e-17 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 24924 TCACGCACTGTCTTGCGGTTGGCATCAATTAGCTTTGGAATTTCCTTCAGTTCAGCAACA 24983 || ||||| || ||| ||||| || ||||||||||| ||||| || | || || || Sbjct 2346 TCTCGCACAGTTCGGCGATTGGCGTCGATTAGCTTTGGTATTTCTTTTAACTCTGCTACC 2287 Query 24984 AGGTCTTTGCCAAGACCATCGAGATATGTTTTCGTCTGCGCAACTTTATACGCCAGAGAA 25043 | |||||| || || ||||| || || ||||| | || || ||||| || |||| ||| Sbjct 2286 AAGTCTTTACCGAGCCCATCAAGGTAAGTTTTTGATTGAGCGACTTTGTAGGCCAATGAA 2227 Query 25044 GCGATCTCCTTTCTGCCCTTTGCCGTTGTGATATCAGGCACAAAGGACATAACTTC 25099 || || ||||| | || || | || |||| |||||| | ||| || ||||||| Sbjct 2226 GCAATTTCCTTGCGACCTTTAACAGTGGTGACATCAGGAATAAAAGAATTAACTTC 2171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123804021039168