Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_027399.1 Length=346602 Score E Sequences producing significant alignments: (Bits) Value seq3187 98.7 2e-15 seq27670 91.5 3e-13 >seq3187 Length=10884 Score = 98.7 bits (108), Expect = 2e-15 Identities = 258/391 (66%), Gaps = 25/391 (6%) Strand=Plus/Minus Query 128689 TGTTCCCAGGGAGGTGTAAGAGGCGGGGCAGCAACCGTACATTTTCCAATGTGGCATTTG 128748 || || || || ||||| | || || || || ||| || || ||||| ||||| | Sbjct 7664 TGCTCTCAAGGTGGTGTCCGTGGTGGTGCTGCTACCTTATTTTACCCAATTTGGCACCTT 7605 Query 128749 GAATTTGAAAATATTGTAGTACTGAAAAATAATAAAGGAACTGAATTTAACCGAGTAAGA 128808 ||| |||||| | |||| |||||||| || || |||| ||||||||| | Sbjct 7604 GAAGTTGAAAGCCTGTTAGTCCTGAAAAACAACCGCGGGGTTGAAGGTAACCGAGTTCGC 7545 Query 128809 CAACTGGACTATTGCTTCCAAATCAATAAGACATTATATCAACGATTGATTGATGGAA-- 128866 || ||||||| | | ||| | | |||| |||||| | ||| Sbjct 7544 CATATGGACTACGGTGTGCAATNNNNNNNNNNNT---ACGAACGTTTGATTAA--GAACC 7490 Query 128867 AAGACATTACATTCTTTAGCCCACATGATGTTCCTGATCTATATGATGCATTTTGTGCTG 128926 ||||||| || | || ||||| ||||| || | ||| ||||||||||| | ||| | Sbjct 7489 AAGACATCACCCTATTCAGCCCTTCAGATGTCCCAGGTCTGTATGATGCATTCTTTGCAG 7430 Query 128927 ATCAAGAAGAATTTGAACGTCTGTATATTAAGTATGAACTCGATGAAACTATTCGTAGGA 128986 | ||||| ||||| |||||| | ||| | | ||||||| ||||| ||||| || | Sbjct 7429 ACCAAGATGAATTCGAACGTTTATATGTGCAATATGAACAAGATGAGACTATCCGCAA-- 7372 Query 128987 AAACTATGCCAGCGATTGAAGCATTT-AGT------CATCTA--ATACAAGAGCGTGCAG 129037 || |||||| || ||||| || ||| ||| | || ||||||||||| Sbjct 7371 -----AT-CCAGCG-TTAAAGCAGTTGAGTTGTTCTCATTAATGATGCAAGAGCGTGCGT 7319 Query 129038 AAACTGGCCGCATTTATATTCAGAATATTGA 129068 ||| ||||| ||||| ||||| || |||| Sbjct 7318 CAACAGGCCGAATTTACATTCAAAACGTTGA 7288 >seq27670 Length=3875 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/123 (77%), Gaps = 5/123 (4%) Strand=Plus/Minus Query 320487 CCTGAAAAATATCCTCAACTTACTATTCGTGTTTCTGGATATGCAGTTCGTTTTAATTCT 320546 || || |||||||| || || ||||| ||||| || || |||||||| |||||||| || Sbjct 1576 CCAGAGAAATATCCACAGCTGACTATCCGTGTATCAGGTTATGCAGTGCGTTTTAACTCA 1517 Query 320547 CTTACGAAAGAACAACAAAATGATGTAATTTCACGAACTTTCACTACTAAGTTCTAATCT 320606 || || ||||||||||| | || || ||| | || |||||||| |||||| ||| | Sbjct 1516 CTGACTAAAGAACAACAGCAAGACGTTATTACTCGTACTTTCAC----AAGTTC-AATGT 1462 Query 320607 AAT 320609 ||| Sbjct 1461 AAT 1459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108523944272834