Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq22013 102 6e-17 >seq22013 Length=6837 Score = 102 bits (112), Expect = 6e-17 Identities = 268/407 (66%), Gaps = 8/407 (2%) Strand=Plus/Plus Query 19539 CAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGG 19598 ||| ||| | | ||||| ||||| | || ||| | || ||||| || || |||||| Sbjct 3512 CAATAGTGGTCTCCACATAATAATTTTTGACGAAATCGATGCAATTTGCAAAGCAAGAGG 3571 Query 19599 TTC------TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATT 19652 || |||| | ||| || ||||| || ||||| || || | || | || | Sbjct 3572 CTCGGTAGCTGGTAATAGTGGTGTGCATGATACCGTTGTAAACCAGTTACTAGCTAAGAT 3631 Query 19653 AGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATT 19712 |||||||| | ||| | |||||||||||||||||||| ||||| || ||| || | Sbjct 3632 CGACGGTGTGGAACAATTAAATAATATTTTAGTTATTGGAATGACCAACCGACGCGATAT 3691 Query 19713 AATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACC 19772 || || || | || || ||||| | || ||| | | || ||||||| |||||| Sbjct 3692 GATTGATGAAGCTCTTTTGCGCCCCGGAAGATTAGAAGTTCAAATGGAAATTAGCTTACC 3751 Query 19773 CGATGAATGTGGACGTGTGGAAATTTTAAACATACATACATCAAC-CATGCGACAAAATA 19831 | || || ||||| |||| ||||| || ||||| | | | ||||| || | Sbjct 3752 TAACGAGCAGGGCCGTGTTCAAATATTAAATATTCATAC-TAAGCGAATGCGGGAATTCA 3810 Query 19832 ACCTTTTAAATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCG 19891 || | || ||||| || |||||||||| | || || |||| ||| | Sbjct 3811 ACAAAATTGCTGGTGATGTTGACAGTAAAGAAATTGCCACTTTAACGAAGAACTTTAGTG 3870 Query 19892 GCGCAGAACTTGAGGGATTAGTGAGGGCCGCCCAATCAATTGCAATG 19938 | || || ||||||| | || | || |||||||||| |||||| Sbjct 3871 GTGCTGAGATTGAGGGGCTTGTACGTGCTGCCCAATCAACAGCAATG 3917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397295344061830