Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq15048 298 5e-76 seq31959 84.2 2e-11 >seq15048 Length=4365 Score = 298 bits (330), Expect = 5e-76 Identities = 1113/1725 (65%), Gaps = 55/1725 (3%) Strand=Plus/Plus Query 130555 TTGATCAATAAAAGCGCCCCTGTCTGCAGCCATGTCGAGCATGGTTTTATTTTTCATCTC 130614 |||||| ||||| || || || || |||||||| | | | |||| | || || Sbjct 1432 TTGATCGATAAATGCTCCTCTATCAGCAGCCATTAAAATTGTTGATTTAACTGATATTTC 1491 Query 130615 CCAAGCGGTCTTGTATAGATCCCTAATGTGTTTGGGTATGCGCGCAATCGATTGAACGCT 130674 |||| | || ||||| ||||||| |||| || ||||| | | || ||||| | Sbjct 1492 CCAAACAGTTTTGTAAAGATCCCGTATGTTTTGTGGTATACTTTCGATATTTTGAATGGA 1551 Query 130675 ACCGTTGTTGGCTATAATTTCGTTGCGCATACTTTTATCGTACAATCCAAGCTGTACAAG 130734 ||| | | | ||| |||||||| ||| || ||| |||| | || | || Sbjct 1552 ACCACGGCTAGATATTATTTCGTTTTTCATTTGTTCATCCCACAAATCTAGTTCGGTTAG 1611 Query 130735 ATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTA 130794 |||| ||| || |||| |||| | |||||| || || | || || || | ||| Sbjct 1612 ATCTCTTAGTAAGTGATGGTTAACCACTTGAAATTCGCCCGACAATACTCGCCGCGTGTA 1671 Query 130795 AATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGC 130854 ||| || ||| |||||||||| |||||||| || || || || || || || | ||| Sbjct 1672 AATATTTGACGTATACGGTTCAAAAGATTCGTTATTTCCCAAAATCTGCGCGGTGGATGC 1731 Query 130855 GGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTT 130914 || ||||| |||||| | |||||| || | | ||| | || | ||||| || Sbjct 1732 TGTTGGCATTGGTGCCACAAGTAGAGAGTTCCTTATACCATATTTCTTTATTTTATTTTT 1791 Query 130915 CAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATTGTTCCACATATCAAATTGTAG 130974 || ||| ||||||||| | | ||||| | || |||||||||| | || || Sbjct 1792 TAAATCAATCCAATCCCACAAATTTGTAGGAGTTACTCC---CCACATATCATACTGCAG 1848 Query 130975 TATGCCTTTACTGGCGGGACTGGATTCGAACGATTCGTAGATTCC---TTCGACACGAGC 131031 ||| || || ||| ||||||| || | | ||| || ||| || | || Sbjct 1849 TATTCCCTTGCTGACGGGACTTCCGTCATATGTTTCATATGGTCCAAATTTTTCT---GC 1905 Query 131032 CAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAA 131091 ||| || || || ||||| || || ||||||| ||||| ||||| ||||| || Sbjct 1906 CAGCTCACAACTTGCCTCCAATGCGCCAAAATAAATTGTTTCAAAGATTTGCTTATTCAA 1965 Query 131092 TTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACC 131151 | ||| | | || || ||||| || ||||||||||||||||||| || || || Sbjct 1966 AAGAAACGCGTTCTCACTTTCATAAGGGTATCTCATTAAAATAAAAGCGTCGGCCAGCCC 2025 Query 131152 CTGTATCCCAACGCCCACCGGTCTATGTTTTAAATTACATTTACGCGAACATTCGGT--G 131209 || | |||| || | ||||||||| ||||| |||| | | | ||| Sbjct 2026 TTGAACACCAATACCAATAGGTCTATGTCGCAAATTCGATTTTTTTG--CTTCGGGTAAT 2083 Query 131210 GGATAAAGGTTAATGTCAATTATTTTGTTTAAATTGCGCACTACAATTTGTGTGACGCTT 131269 |||||| || | ||||||||||| |||||||| || |||| |||||| | Sbjct 2084 GGATAATAATTTACATCAATTATTTTATTTAAATTCTTGGTGACTATTTTTGTGACCTCT 2143 Query 131270 TTCAATTTGTCGAAATCAAACGTGCCAGTTTCGAGGTTTACAAATTGATTTACACATATT 131329 || ||||| | || ||||| | | | || | ||||| ||||| | || Sbjct 2144 TTTAATTTTTTAAAGTCAAA---GACTTTATCCGCTGTCACAAACATATTTAAAGCAATC 2200 Query 131330 GACGCCAGATTACAAACTGCCGTTTCGTCATAATCGCAATACTGAACAATTTCGGCGCAC 131389 || || || || ||||| || | || || | |||| | ||||||||| | || Sbjct 2201 GAAGCGAGGTTGCAAACGGCTATCTCATCTGGTGCCGAATATTCAACAATTTCAGTACAT 2260 Query 131390 AAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACATG-GTC 131448 | |||||||| ||||| || || | |||||||| |||||||| ||| |||| || Sbjct 2261 AGATTACTGCATTTTATAGTACCGAGGTTTTGTTGGTTGCTTTTTCTATT-GCATGAATC 2319 Query 131449 CTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAAT--GTATCGAAAG 131506 ||||| | ||| || || || || ||||| ||||| | || ||||| | | |||| Sbjct 2320 TTTGTATAGCATATATGGGGTACCTGTTTCCACTTGTGCCTCTATAATCGCAAACCAAAG 2379 Query 131507 AGTTTTCGAGCAGACAATTGATATTTGTATTGGCCGCG------TTTTTCGTAATTTTCG 131560 | | | || || | ||| |||| | |||| ||| || || ||||| Sbjct 2380 GGACT--GGGC-----TTTTACTTTTCTATTCG-CGCGTCCCTCTTTCTCATATTTTTCA 2431 Query 131561 TACAACGTTTCAAAGTTTTG---GCCAAACGAACTGTCCAAATTGGGACATTCGCTGGGA 131617 ||||| || ||||| || | |||||| || ||| ||||| | | || Sbjct 2432 TACAAGGTCTCAAA-TTCCGAACCCCAAACTTCATG--CAAGCCAGGACACTTGTGAGGG 2488 Query 131618 CACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCAT 131677 ||||| || ||||| | |||| ||||||||| |||||||||||||| || | ||| Sbjct 2489 CACATAAGGGACCAATCTTCGTTAGCTTCAACTCGTTTCATAAACAAATCGGGAATCCAC 2548 Query 131678 AACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAAATTT 131737 || || || || | ||| | |||| | | ||||| | ||| | |||| || |||| Sbjct 2549 AAAGCATAAAATAAATCACGAGCTCTATGTTCTTCCTTGCCCGTGTTTTTCTTTAAATCC 2608 Query 131738 AAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGC 131797 ||||| || ||||| || | ||||| || || || || | ||| | || || | Sbjct 2609 AAAAACTCAAAAATATCAGAGTGCCAAGGCTCTAAGTAGATTGCAAAAGCTCCAGGCCTT 2668 Query 131798 TTACCG---CCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCC 131854 || ||| ||||| | ||| | || ||| |||||| | || | | ||| ||| || Sbjct 2669 TTTCCGCCTCCTTGGTCAACGTAGCGGGCCACATTGTTGAAAACTCTTAGCATTGGCACC 2728 Query 131855 AAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAG--CTGCCATTGGCTCTGATTTTGT 131912 | ||||| | ||||||| || || | || ||| |||| || |||| || | Sbjct 2729 AGGCCGTTAGAAGTTCCATTAGT--TCCTGATATAGATGTGCCTTTAGCTCGTATGCAAT 2786 Query 131913 GAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCATTTGGTTAGAGTG- 131971 |||| || | |||||||||||| | ||||||| || | ||||||| ||| | || Sbjct 2787 GAACATTTATTCCAATACCTCCAGCTGATTTAGATATCATAGCGCATT--GTTCAACTGA 2844 Query 131972 -TTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAAGCAAGAGGACAACTG 132030 ||| | |||||||| | || || | || | || |||||||| || | || Sbjct 2845 TTTAAAAATACCTTCAATTGAATCTGCAACCATTGTAAGTAGGAAGCAAGATGAAAGTTG 2904 Query 132031 TTGGTGAAATGTGCCGGCTGAAAACAATGTGGGGCTGGCGTGTGTAAAAAGTTTTTTGGC 132090 | ||| ||| | || | ||| | ||| || || || ||||||| | ||| | Sbjct 2905 CGGTCGAATTGTTGCAGCAGCAAAAAGTGTCGGTGATGCATGCGTAAAAAATCTTTCCGA 2964 Query 132091 CATGCACCGATACGATTGTATAGCGGACTCGATATCGCCCAGATGTATGGTCAATGCGAC 132150 || | || | || || ||||| || ||||| | ||| || | | || Sbjct 2965 CAGATAGTTGTAGGTTTCAATTGCGGAATCTATATCATCACCATGAATACCTATAGACAC 3024 Query 132151 CCGCATGTACATGTGTTGAATGCGCTCGGCCGTTTTGCCGTCGATTTTGATCAAATA--A 132208 || ||| ||||||| ||| | || || ||||||||| |||||| | ||||| | Sbjct 3025 CCTCATCAACATGTGCTGAGGTCTTTCAGCGATTTTGCCGTTGATTTTCAATAAATAAGA 3084 Query 132209 CCGTTTTCCAAAGTTTTGAAACCAAAATATTTGTATTCATAATCA 132253 ||| ||| | ||||| || |||||||| ||||| || ||||| Sbjct 3085 CCG--TTCAAGTGTTTTAAATCCAAAATAATTGTAGCCAAAATCA 3127 >seq31959 Length=2257 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/143 (74%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 96884 CAAAGGTTTACACGGGTTTCATGTACACGAGTTTGGCGACACGAGCAACGGCTGCACTTC 96943 |||||| | ||||| || ||||| |||||||| ||||||| | ||||||||||| || Sbjct 935 CAAAGGGCTGCACGGCTTCCATGTGCACGAGTTCGGCGACAACACCAACGGCTGCATCTC 876 Query 96944 GGCCGGCGAACATTTCAACCCTACATTGCAA-AATCACGGCGCACCCAGCGCCATTGAAC 97002 |||||| || |||||||| | |||| | |||||||| |||| || | || | Sbjct 875 CGCCGGCCCCCACTTCAACCC-GCTGGGCAAGGAGCACGGCGCCCCCACCGACGAGGAGC 817 Query 97003 GCCACGTTGGTGATCTGGGCAAC 97025 |||| | || || ||||||||| Sbjct 816 GCCATCTCGGCGACCTGGGCAAC 794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424762637000592