Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_027984.1 Length=57677 Score E Sequences producing significant alignments: (Bits) Value seq30410 152 2e-32 seq28657 125 3e-24 seq6146 113 2e-20 seq12086 109 2e-19 >seq30410 Length=1798 Score = 152 bits (168), Expect = 2e-32 Identities = 194/267 (73%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 14146 GCTAAGCAGCAGTGGATTGAGTTTGAGTATCACAACCTCGACAGGTTTGAGGAAATATTC 14205 ||||| || || |||||||||||||||||||||||||| ||| | ||| || || | Sbjct 1531 GCTAAACAACAATGGATTGAGTTTGAGTATCACAACCTAGACCGTTTTACCGAGATTTGG 1590 Query 14206 ATCTCGATGGACGTTGATGATGTTGGTCGTGAAGCCGCAAGGGAAATCGCAAGCCGACTC 14265 | || |||| | ||| || || || || || || |||| || || || | ||||| Sbjct 1591 CTGTCACTGGATGCTGACGAAGTAGGGCGAGAGGCAGCAAAAGAGATTGCTAATCGACTT 1650 Query 14266 GGTGAACATCGTTGCCGTCTTGTTACTCTGCCGTACAAAGACATCAACGAATGCCTGATG 14325 |||||| ||||||| || |||||| | |||||| | ||||| |||||||||||||| | Sbjct 1651 GGTGAATATCGTTGTCGCCTTGTTTCACTGCCGAAAAAAGATATCAACGAATGCCTACAG 1710 Query 14326 AACGGTGTTACCGAGGATGAAATCTGGCAGTACATCGGCACGGCATCCTATTTCGATCCT 14385 || ||||| | || |||||| ||||| | | || ||| |||| || || ||| Sbjct 1711 GCTGGAATTACCCAAGAAGAAATCATTAAGTACCTTGAAACCGCAACCTACTTTGACCCT 1770 Query 14386 GAAGAACTCTACAGTGCGCGAGAGTTT 14412 || || | | |||||| || |||||| Sbjct 1771 GATGAGTTATGCAGTGCCCGCGAGTTT 1797 >seq28657 Length=2955 Score = 125 bits (138), Expect = 3e-24 Identities = 131/172 (76%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 10160 TTTCTAATAGTGTAATATTTTCTTACATCACTGCTTGAAAATGCTTCTTGAATAACAGCT 10219 ||||| || |||||||||||| | || ||||| || ||||| || ||||| ||||| ||| Sbjct 172 TTTCTTATTGTGTAATATTTTTTAACTTCACTACTAGAAAAAGCCTCTTGTATAACCGCT 113 Query 10220 TCTATATAAAGGCGGTCAATGCTAAGATTATCAGAGTTTGATTCAGTAACGCGTATGGCA 10279 |||||||| | || || ||||| | || | |||||| | ||||| || ||||| | | Sbjct 112 TCTATATACAATCGATCTATGCTCATGTTTTGAGAGTTAGCCTCAGTGACTCGTATAGAA 53 Query 10280 GCTAATTCAACATTATATAAATTAAGAATGTCGAGGATGTTATTTCTCACAT 10331 || | ||||||||||| ||||| | || || | || |||||||| |||| Sbjct 52 GCCACATCAACATTATAAAAATTTAATATATCCAATATATTATTTCTTACAT 1 Score = 111 bits (122), Expect = 6e-20 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 9555 CCAAAGTCAGATAGCATGGCCTCATTTCTGTTTGATATCATAATGTTATTAGGTTTTATA 9614 ||||| |||| ||||| || ||||| | || || | ||| || || || || |||||| Sbjct 838 CCAAAATCAGCAAGCATTGCTTCATTGCGATTAGAAAGCATTATATTGTTTGGCTTTATA 779 Query 9615 TCAAAATGCATAAGACCTTTTGAGTGTATATGATAAAGTCCACTTAAAAATTGAATGGAA 9674 |||||||| ||||| |||| |||||||||| ||| || | || |||||| || | Sbjct 778 TCAAAATGAATAAGCTTATTTGTATGTATATGATTAAGACCGCCTAGAAATTGTATTGCG 719 Query 9675 TACCGTATTATCTCCCTGCTTGTAAGATTAttttttttCATTAATTGGTTTAGCGAACCA 9734 || || || || |||| || || || | | | ||||| ||| |||| || || Sbjct 718 TAACGAATAATTTCCCGTGGAGTTAGGTTCTCTATACTCATTTTTTGATTTAAAGACCCG 659 Query 9735 TTATGATAAAATGGCATGGCTATATA 9760 || | |||||||||||| |||||||| Sbjct 658 TTTTTATAAAATGGCATTGCTATATA 633 >seq6146 Length=11763 Score = 113 bits (124), Expect = 2e-20 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 1241 TTATCTGGGGAAGGAATTATGCCCCACGTCACTGAAAAAATGCTGGGGCATGAACTGGGA 1300 ||||||| ||||| | || || || | ||| |||||||| ||||||||| ||| Sbjct 9568 TTATCTGAAGAAGGGGTAGCCCCGCATGTAATTGAGAAAATGCTAGGGCATGAAATGGCT 9509 Query 1301 GGAGTGATGGCCGTGTATAATAAACACGACTGGTTGTCGGAACAGAAAGATGCGTATGAG 1360 ||| | ||||| ||||||||||||||||||||| | ||||| ||||||||||| || Sbjct 9508 GGAATCATGGCTGTGTATAATAAACACGACTGGATTAGTGAACAAAAAGATGCGTACGAA 9449 Query 1361 TTGTATGCTGATAAAATTTTCTGGCAC 1387 | |||| |||||| | ||||||||| Sbjct 9448 ATACATGCAGATAAATTATTCTGGCAC 9422 >seq12086 Length=38917 Score = 109 bits (120), Expect = 2e-19 Identities = 87/105 (83%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 19481 TATATATTCGAAGGCGAACAAGGTAAGCGAGACAGCATTATTGTCGTCGCTCAGTTGTCG 19540 ||| |||| ||| ||| |||||||||| |||||||||||||| || ||||| || ||| Sbjct 1697 TATTTATTTTCAGGTGAAGAAGGTAAGCGCGACAGCATTATTGTAGTTGCTCAATTATCG 1638 Query 19541 CCGGAATTCACCGCTCGCCTTGTTGACCGCTGGCGAGAACTCGAA 19585 || ||||| || ||||| || |||||||||||| |||||||||| Sbjct 1637 CCTGAATTTACAGCTCGACTAGTTGACCGCTGGAAAGAACTCGAA 1593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184372157107188