Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq15048 125 9e-24 >seq15048 Length=4365 Score = 125 bits (138), Expect = 9e-24 Identities = 450/695 (65%), Gaps = 23/695 (3%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||| || |||| || || |||||||| |||| ||||| ||||| || || |||||||| Sbjct 1669 GTAAATATTTGACGTATACGGTTCAAAAGATTCGTTATTTCCCAAAATCTGCGCGGTGGA 1728 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 ||||||||||||||||||| | ||| ||| | | ||| | | ||| || | Sbjct 1729 TGCTGTTGGCATTGGTGCCACAAGTAGAGAGTTCCTTATACCATATTTCTTTATTTTATT 1788 Query 110827 CTTGAGAACATCCCAGT----CGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACT 110882 || | | || ||| | | | ||| | || | | || ||||||| ||| ||| Sbjct 1789 TTTTAAATCAATCCAATCCCACAAATTTG---TAGGAGTTA-CTCCCCACATATCATACT 1844 Query 110883 GAAGCA-CCCCTTG-GGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTC 110940 | || | |||||| || ||||| || ||| | |||||||| | || ||| Sbjct 1845 GCAGTATTCCCTTGCTGA--CGGGACTTCCGTCATATGTTTCATATGGTCCAAATTTTTC 1902 Query 110941 AGCCAATTCACAGCTCGCCTCCAGGGATGCG---TGATACATGGTTTCAAAGATACGAGC 110997 |||| ||||| || ||||||| ||||| ||| || ||||||||||| | Sbjct 1903 TGCCAGCTCACAACTTGCCTCCA---ATGCGCCAAAATAAATTGTTTCAAAGATTTGCTT 1959 Query 110998 ATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGC 111057 ||||| || | || ||| | | ||| | |||||||| | || || Sbjct 1960 ATTCAAAAGAAACGCGTTCTCACTTTCATAAGGGTATCTCATTAAAATAAAAGCGTCGGC 2019 Query 111058 GAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC 111117 || ||||||||||| | |||||||||||| ||||||| ||| || ||| || Sbjct 2020 CAGCCCTTGAACACCAATACCAATAGGTCTATGTCGCAAATTCGATTTTTTTGCTTCGGG 2079 Query 111118 AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGAT 111177 | |||||| ||||| ||||| | | |||| ||| ||||| || || ||||||| Sbjct 2080 TAATGGATAATAATTTACATCAATTATTTTATTTAAATTCTTGGTGACTATTTTTGTGAC 2139 Query 111178 TTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCT-TCATTGACATACTTTGGAAGGG 111236 || | | ||||| | | ||||| | | || ||| ||||| || | | Sbjct 2140 CTCTTTTAATTTTTTAAAGTCAAAGACTTTATCCGCTGTCACAAACATATTT----AAAG 2195 Query 111237 CGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTG 111296 | || || || | |||||||| || ||||||| | | || || | |||||| | Sbjct 2196 CAATCGAAGCGAGGTTGCAAACGGCTATCTCATCTGGTGCCGAATATTCAACAATTTCAG 2255 Query 111297 TACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACG 111356 |||||| || | || || || || | || | |||||| || || | ||||| | Sbjct 2256 TACATAGATTACTGCATTTTATAGTACCGAGGTTTTGTTGGTTGCTTTTTCTATTGCATG 2315 Query 111357 CATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCC 111391 ||| ||||| ||||| || || || || || ||| Sbjct 2316 AATCTTTGTATAGCATATATGGGGTACCTGTTTCC 2350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627771633633600