Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq9782 123 3e-23 seq9388 91.5 2e-13 >seq9782 Length=20874 Score = 123 bits (136), Expect = 3e-23 Identities = 173/240 (72%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 179065 TCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATTG 179124 || ||||| || | ||||| || || || ||||| | ||||| || | ||||| ||| Sbjct 11987 TCCTTGCCGCCGTTCAGACGAGTACCGAACTGACCGCGCGGCTCCAGCAAGTTGATGTTG 12046 Query 179125 TTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCACC 179183 || || |||| |||| | |||||| || ||||| || || || ||||| || || || Sbjct 12047 TTCGAGCCCACATAGTTCTGGGCCAAATTCACAATGGTCATTTGC-AGGGACACCTCGCC 12105 Query 179184 GTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGCCACCTTCATCTCATC 179243 ||||||||| || ||| | || ||||| | | | |||||| |||||||||| ||| Sbjct 12106 GTGATGGTAGGCGGACATTTCGGCCACCGAACCGGACAACTGGGCCACCTTCACCTCGCG 12165 Query 179244 CTTGAGGTTCTTGTGGAAGCACGCATACATCACCTTTCTTTGTGAAGGCTTGAGGCCGTC 179303 |||| ||| | |||||||| |||||||||| | ||| ||||||| |||||| Sbjct 12166 CTTGTCGTTGCGCTTGAAGCACGTGAACATCACCTTGCGTTGGCCCGGCTTGAAGCCGTC 12225 >seq9388 Length=2963 Score = 91.5 bits (100), Expect = 2e-13 Identities = 166/241 (69%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 11970 TTCAACCACGAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGAT--G 12027 ||||| || |||||||| || || || | ||||||||||| || |||||| | | Sbjct 679 TTCAATCATGAGTCACCGCGGCGCGGTGAGAATTTCGTGACACGCAAAATCACCCGTTCG 620 Query 12028 GTATCAAACAAATCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCG 12087 || | || | || | | || ||||||| | |||||||| ||| | | | Sbjct 619 GTGGCGAAGA--TCTTTCTCAATCAGCTGGAGTTCTTCGAATTGGGCAACTTGGATTCGA 562 Query 12088 AGAGGGACTGGGGACATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAG 12147 | | |||||||| ||||||| ||||||||| || ||||||||| | | || || | | Sbjct 561 AACGCGACTGGGGCCATGCCATGGACTATGTGGAGGCCATGTGGATGATGCTGCAGCGGG 502 Query 12148 AAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTG 12207 | | | ||||| || ||| | || ||||| ||||| ||| || |||||||||||| Sbjct 501 ACACGCCCGACGATTACGTCATAGCCACGGGCGAGACGCACAGTGTGCGGGAGTTCGTTG 442 Query 12208 A 12208 | Sbjct 441 A 441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618178812226960