Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq9782 96.9 4e-15 seq7146 86.0 7e-12 >seq9782 Length=20874 Score = 96.9 bits (106), Expect = 4e-15 Identities = 170/245 (69%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 168458 TCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTG 168517 ||||| || || | ||||| ||||| |||||||| | |||||| || | ||||| ||| Sbjct 11987 TCCTTGCCGCCGTTCAGACGAGTACCGAACTGACCGCGCGGCTCCAGCAAGTTGATGTTG 12046 Query 168518 TTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTG-TCCGCGAGAGAGACTTCACC 168576 || || |||| |||| | ||||| || ||||| || | || || || || || || Sbjct 12047 TTCGAGCCCACATAGTTCTGGGCCAAATTCACAATGGTCATTTGC-AGGGACACCTCGCC 12105 Query 168577 GTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCATC 168636 ||| ||||| || | | || || || | | | |||||| ||||| |||| ||| Sbjct 12106 GTGATGGTAGGCGGACATTTCGGCCACCGAACCGGACAACTGGGCCACCTTCACCTCGCG 12165 Query 168637 CTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCATC 168696 |||| || | |||||| | | |||| ||||||||||| ||||||| || || Sbjct 12166 CTTGTCGTTGCGCTTGAAGCACGTGAACATCACCTTGCGTTGGCCCGGCTTGAAGCCGTC 12225 Query 168697 CGCCA 168701 | ||| Sbjct 12226 CACCA 12230 >seq7146 Length=6253 Score = 86.0 bits (94), Expect = 7e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| | |||||| || | || || || || ||||| || |||||||| || || Sbjct 5594 CTTCGGTGAGCGCATCATTGCGTTCGCCGCCGTCGAGGGCATTTTCTTCTCGGGCAGTTT 5653 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 | | | || | ||||| |||||||| || |||||||| || ||| |||||||||||| Sbjct 5654 CGCCTCGATCTTCTGGCTGAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGA 5713 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCA 94943 | | ||||| || |||||||| || || Sbjct 5714 GTTGATCTCACGCGACGAGGGCCTGCA 5740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583018994653840