Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq3370 233 6e-56 seq3053 201 3e-46 seq15048 105 2e-17 seq1101 89.7 2e-12 >seq3370 Length=4466 Score = 233 bits (258), Expect = 6e-56 Identities = 752/1146 (66%), Gaps = 41/1146 (4%) Strand=Plus/Minus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 ||| | || || ||||| || || || || ||||| || | ||| | ||| ||| Sbjct 4440 GCTGTTGGTATTGATTTGGGCACAACCTACTCTTGCGTGGGTGTGTTCCAACATGGAAAA 4381 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || ||||| ||||| || || || || ||| | || || || || || ||||| || ||| Sbjct 4380 GTTGAAATTATTGCCAACGACCAGGGCAACCGTACCACTCCGTCGTATGTTGCCTTCACC 4321 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 |||||||| ||| | ||||||||| | || |||||||| | || || |||| || Sbjct 4320 GAAACTGAACGTCTCATTGGTGATGCAGCCAAAAATCAGGTCGCCATGAACCCAACCAAC 4261 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCT 349438 || |||| ||||||||||| | |||||| | | || || | ||||| Sbjct 4260 ACCATTTTCGATGCTAAGCGTTTGATTGGTCGCAAATTCGAGGATGCCGCCGTGCAATCC 4201 Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGAT---AAACCAATTATT 349495 || | || || | || || || ||| || || |||| || || | || Sbjct 4200 GACATGAAGCACTGGCCCTTCGAGGTGGTT-----AG-CGCTGATGGCAAGCCCAAGATC 4147 Query 349496 GAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCC-GAAGAAATTTCATCAATGGT 349554 |||||| || || | || || || | ||| | ||| || ||||| || || ||||| Sbjct 4146 CAGGTTGTCTACAAGGACGAG-AAGAAGACTTTCTTCCCTGAGGAAATCTCTTCGATGGT 4088 Query 349555 TTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGT 349614 | || |||||||| | || || || || || || | ||||| | ||||||| Sbjct 4087 CCTGACCAAGATGAAGGAGACCGCCGAGGCCTACTTGGGCAAGACAGTCAGCAATGCTGT 4028 Query 349615 TATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAG 349674 || ||||| || ||||| || || || | || ||| || || || ||||| || | Sbjct 4027 GATCACTGTCCCGGCCTACTTCAACGACTCACAACGTCAGGCTACCAAGGATGCCGGTAC 3968 Query 349675 CATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATA 349734 |||||| || || ||||| | | || || || || |||||||| || || || || || Sbjct 3967 CATTGCCGGTTTGAATGTGTTGCGTATCATCAACGAGCCCACTGCCGCTGCCATCGCCTA 3908 Query 349735 TGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGG 349794 ||| | || || | | || | || || | || || || ||||| ||||| || Sbjct 3907 TGGCTTGGACAAGAAGGCTGTCGGTGAGCGCAACGTGCTCATCTTCGATTTGGGTGGCGG 3848 Query 349795 TACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGC 349854 |||||||||||| || | || | | || || || || || || || || | ||||| Sbjct 3847 TACTTTTGATGTGTCCATTCTGTCCATCGACGATGGCATCTTCGAGGTCAAGTCGACTGC 3788 Query 349855 TGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAA 349914 ||| ||||| ||| | ||||| |||||||| || || ||||| ||| | || ||||| | Sbjct 3787 TGGCGATACCCATTTGGGTGGTGAAGATTTCGACAACCGTCTGGTTACCCACTTTGTGCA 3728 Query 349915 AGAATTTAAGCGTCAAGC-TAAAATTGAT---ATTGGAGATAATCCTAGAGCAATGCGTC 349970 || || ||||| ||||| || | ||| | | | || | | || |||||| Sbjct 3727 GGAGTTCAAGCG-CAAGCACAAGAAGGATCTCACCAGCAACAAGC---GCGCCCTGCGTC 3672 Query 349971 GCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTA 350030 || | | || || || || || || |||||| || | || || | ||||| | | Sbjct 3671 GCTTGCGCACCGCTTGCGAGCGCGCAAAGCGTACCCTGTCGTCGTCCACCCAGGCGAGCA 3612 Query 350031 TTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGT 350090 |||| || ||||| || || || | ||||||| | || || || ||||| || | Sbjct 3611 TTGAGATCGATTCGCTGTTCGAGGGTACCGATTTCTACACCTCGATCACTCGTGCCCGTT 3552 Query 350091 TTGAAGAATTATGTATG--GATCTTTTTAG-AGCAACAATGGATCCTGTGGAAAAAG-TA 350146 | || || | || | | || | || | ||| |||||||| || || || || | || Sbjct 3551 TCGAGGAGT--TGAACGCCGACTTGTTCCGCAGC-ACAATGGACCCCGTCGAGAAGGCTA 3495 Query 350147 TTAAAAGATGCAAAAATGTCCAAAAATCAG--ATTGATGAAGTAGTTTTAGTTGGTGGTT 350204 || || || || ||| | || |||| ||| | || | || || ||||| || | Sbjct 3494 TT-CGCGACGCCAAGATG--GACAAGTCAGCCATTCACGATATTGTGTTGGTTGGCGGCT 3438 Query 350205 CTACACGTATTCCAAAAGTTCAA---CAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC 350261 | || ||||| ||||| || ||| | ||| | | || | || || ||||| ||| Sbjct 3437 CCACCCGTATCCCAAAGGTGCAACGTCTGTTGCAA---GATCTGTTCAACGGCAAGGAA- 3382 Query 350262 CTTCTAGA--TCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATC 350319 || | | || || || || || || ||||| || ||||| ||||| |||||||| | Sbjct 3381 -TTGAACAAGTCCATCAACCCCGACGAGGCTGTGGCCTATGGCGCTGCCGTTCAGGCCGC 3323 Query 350320 TATTTT 350325 ||| || Sbjct 3322 TATCTT 3317 Score = 91.5 bits (100), Expect = 4e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 183681 TCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCCG 183740 || |||||||||||||| ||||| |||||||||||||| | || || || || || || Sbjct 3755 TCGAAATCTTCACCACCCAAATGGGTATCGCCAGCAGTCGACTTGACCTCGAAGATGCCA 3814 Query 183741 TCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAA 183790 || || || | ||| || |||||||| ||||| ||||||||||| || Sbjct 3815 TCGTCGATGGACAGAATGGACACATCAAAAGTACCGCCACCCAAATCGAA 3864 >seq3053 Length=25279 Score = 201 bits (222), Expect = 3e-46 Identities = 182/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | ||||| ||||| | || ||||| |||||||| |||||||| || Sbjct 10190 ACCACCACGAAGACGAAGAACCAGATGTAATGTTGACTCCTTTTGAATGTTATAATCGGA 10131 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 ||||| || |||||||| | ||| ||||||||||| ||||||||||| ||||| ||||| Sbjct 10130 CAATGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAATTAGACGTTGTTGATCTGGAGG 10071 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 |||||| ||||| |||||||| || ||||| ||||| || || | || || ||||| || Sbjct 10070 AATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTCTCGATTGTGTCCGAAGGTTCGAC 10011 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || | || | ||||| || || || ||||||||||| ||||||||| Sbjct 10010 CTCTAAGGTGATGGTCTTCCCCGTGAGGGTTTTTACAAAGATCTGCATT 9962 >seq15048 Length=4365 Score = 105 bits (116), Expect = 2e-17 Identities = 286/437 (65%), Gaps = 8/437 (2%) Strand=Plus/Plus Query 206449 TGGTCAATATATCGAGCTGTTTTATTAAATACGCCTAGCATAGGAATAATACCATTAGAA 206508 ||||||| || || || || || || || | |||||| || | | || |||||| Sbjct 2681 TGGTCAACGTAGCGGGCCACATTGTTGAAAACTCTTAGCATTGGCACCAGGCCGTTAGAA 2740 Query 206509 GTTCCATTTGTTCCTCTAATATGACTGCCAGTCCCTCTAATATTATGTATATGTAATCCA 206568 |||||||| |||||| ||| |||| | ||| || ||| | || || |||| Sbjct 2741 GTTCCATTAGTTCCTGATATAGATGTGCCTTTAGCTCGTATGCAATGAACATTTATTCCA 2800 Query 206569 ATTCCTCCTGCCCATTTTGAAATATTAGCACATTCTTTTAATGTATTATAAATTCCATCA 206628 || ||||| || |||| || || |||| |||| || | || ||| |||| || ||| Sbjct 2801 ATACCTCCAGCTGATTTAGATATCATAGCGCATTGTTCAACTGATTTAAAAATACCTTCA 2860 Query 206629 ACACTATCACTTTCCATAGCAATTAAAAAACAAGAACTTAATTGTGGTCGTGGCGTTCCA 206688 | ||| |||| | || || || ||||| | ||| ||||| ||| || Sbjct 2861 ATTGAATCTGCAACCATTGTAAGTAGGAAGCAAGATGAAAGTTGCGGTCGAATTGTTGCA 2920 Query 206689 GCATTAAATAAAGTAGGAGTAGCATGTGTAAAATATTTTTGAGACATTAAATTATAAGTA 206748 ||| ||| | || || | ||||| |||||| || ||| |||| | || ||| Sbjct 2921 GCAGCAAAAAGTGTCGGTGATGCATGCGTAAAAAATCTTTCCGACAGATAGTT----GTA 2976 Query 206749 GTTTTCACTT----TTTCTAAATCATTTTCGTGTAAACAAATTGCTACACGTAACCACAT 206804 | ||||| || |||| ||||| | || | || || | || | | | |||| Sbjct 2977 GGTTTCAATTGCGGAATCTATATCATCACCATGAATACCTATAGACACCCTCATCAACAT 3036 Query 206805 ATATTGAGGTCTTTCAATTAtttttttGTTAATGTGCATTAAATATGCACGCTCAAGAGT 206864 | |||||||||||| ||||| ||| || | || |||||| | || ||||| || Sbjct 3037 GTGCTGAGGTCTTTCAGCGATTTTGCCGTTGATTTTCAATAAATAAGACCGTTCAAGTGT 3096 Query 206865 TTTAAAGCCAAAATAAT 206881 |||||| |||||||||| Sbjct 3097 TTTAAATCCAAAATAAT 3113 Score = 98.7 bits (108), Expect = 3e-15 Identities = 285/430 (66%), Gaps = 14/430 (3%) Strand=Plus/Plus Query 204909 ACATAAATTACTAGACTTAATAGTACCAAGGTTTTGTTGATTTGTTTTATAATTAACAGC 204968 ||||| |||||| | || |||||||| ||||||||||| || |||| ||| | Sbjct 2257 ACATAGATTACTGCATTTTATAGTACCGAGGTTTTGTTGGTTGCTTTTTCTATTGCATGA 2316 Query 204969 ATCTTTATATAACATATATGGTGTACCTGTTTCCATTTGCGAATCTAAAATTTTGATCCA 205028 |||||| |||| ||||||||| ||||||||||||| ||| | |||| ||| | ||| Sbjct 2317 ATCTTTGTATAGCATATATGGGGTACCTGTTTCCACTTGTGCCTCTATAATCGCAAACCA 2376 Query 205029 TAAATCAC-GAGCattaatttgtttagtaaa---taaattttttgattcatatttgagat 205084 || || | || || | || | || | | | ||| |||||||| || Sbjct 2377 -AAGGGACTGGGCTTTTACTTTTCTATTCGCGCGTCCCTCTTTC---TCATATTTTTCAT 2432 Query 205085 ataattttttataatt---atCTCCATAACATTCTGATAATCCAGGTGTTCTATCTGGAC 205141 | || | | | |||| | | ||| ||| | || || ||||| | | || | Sbjct 2433 ACAAGGTCTCA-AATTCCGAACCCCA-AACTTCATGC-AAGCCAGGACACTTGTGAGGGC 2489 Query 205142 AAAATAATGACCATTTGCTATTAGTATGTACTCTTTCCATAAACAGATCTGAAATCCAAA 205201 | | | ||||| | |||| | |||| || |||||||| ||| | |||||| | Sbjct 2490 ACATAAGGGACCAATCTTCGTTAGCTTCAACTCGTTTCATAAACAAATCGGGAATCCACA 2549 Query 205202 GAGCATAAAAAAGGTCACGAGCGCGAAGTTCTTCGTCTCCATGATTTTTCTTTAAATCTA 205261 ||||||||| | |||||||| | | ||||||| | || |||||||||||||| | Sbjct 2550 AAGCATAAAATAAATCACGAGCTCTATGTTCTTCCTTGCCCGTGTTTTTCTTTAAATCCA 2609 Query 205262 AAAATTCTTCAATATCCGGATGATGTGGTTCAATATACATAGCAAAACTTCCAGCTCTTT 205321 |||| || |||||| | || || || | || || |||||| ||||| |||| Sbjct 2610 AAAACTCAAAAATATCAGAGTGCCAAGGCTCTAAGTAGATTGCAAAAGCTCCAGGCCTTT 2669 Query 205322 TTCCACCACC 205331 |||| || || Sbjct 2670 TTCCGCCTCC 2679 >seq1101 Length=117299 Score = 89.7 bits (98), Expect = 2e-12 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 349560 TTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTA 349619 ||||||||||||||| ||| ||||| ||| | | | | || | |||| || ||| Sbjct 48586 TTAAAATGAAGGAAACTGCGGAAGCTTATCTCAATACACCTGTGAAGAATGCAGTCGTTA 48645 Query 349620 CTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTG 349679 | || || || ||||| || ||| | || ||| || || ||||||||||| |||| Sbjct 48646 CAGTGCCTGCATATTTCAACGATTCACAACGTCAAGCCACTAAAGATGCTGGTCAAATTG 48705 Query 349680 CGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGC 349739 | || || || ||| || | | || || ||||| ||||| ||||| |||| ||||| Sbjct 48706 CTGGTTTGAACGTTTTACGTGTAATCAACGAACCAACTGCAGCAGCTCTTGCTTATGGAA 48765 Query 349740 TTGATAAAA 349748 | || |||| Sbjct 48766 TGGACAAAA 48774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514610508742298