Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq9782 140 4e-28 seq9388 105 7e-18 >seq9782 Length=20874 Score = 140 bits (154), Expect = 4e-28 Identities = 299/443 (67%), Gaps = 4/443 (1%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 ||||| |||||||| || || ||||| |||| | |||||| | || || ||| | Sbjct 11807 CCGGTGCCGATGCCGTCGGCTCCGTTCACCAAGACCATCGGTATGATCGGAATGTACCAT 11866 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 | ||| || | | || || || |||| ||||| ||| | || || || |||| Sbjct 11867 TGCGGTTCGATTTTCTGGCCATCGTCCACTTCGTATGTCAGCAAGGGATCATCCAGCGGA 11926 Query 151996 TCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGCA 152055 | ||| || | || |||| || || ||||||| ||||| || | ||||| Sbjct 11927 TGGAAGATGAGGCGCGTCAACGGGGACATCAGCGTGAAAATGTAACGAGCACTGGCACTG 11986 Query 152056 TCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTG 152115 |||||||| || ||| || || || ||||| || ||||| || | ||||| |||| Sbjct 11987 TCCTTGCCGCCGTTCAGACGAGTACCGAACTGACCGCGCGGCTCCAGCAAGTTGATGTTG 12046 Query 152116 TTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCG 152175 || | |||||| | ||||| |||||||||||||| || ||||| | | || ||| Sbjct 12047 TTCGAGCCCACATAGTTCTGGGCCAAATTCACAATGGTCATTTGCAGGGACACCTCGCCG 12106 Query 152176 TGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC-CG- 152233 || || || || | | || || | | || | |||||| |||||||||| || || Sbjct 12107 TGATGGTAGGCGGACATTTCGGCCACCGAACCGGACAACTGGGCCACCTTCACCTCGCGC 12166 Query 152234 TCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGT 152293 | ||| ||| ||||| || | | | ||||||||||| ||| || || || |||| Sbjct 12167 TTGTC--GTTGCGCTTGAAGCACGTGAACATCACCTTGCGTTGGCCCGGCTTGAAGCCGT 12224 Query 152294 CCACCACGTGAGGAATCGAACGC 152316 |||||| |||||||| ||| Sbjct 12225 CCACCAGACAGGGAATCGAGCGC 12247 Score = 132 bits (146), Expect = 5e-26 Identities = 296/442 (67%), Gaps = 2/442 (0%) Strand=Plus/Plus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 || || ||||| || || || || |||| || | |||||| | || |||| ||| | Sbjct 11807 CCGGTGCCGATGCCGTCGGCTCCGTTCACCAAGACCATCGGTATGATCGGAATGTACCAT 11866 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271 | || || | | | | || |||||| |||| | |||| | || || |||| Sbjct 11867 TGCGGTTCGATTTTCTGGCCATCGTCCACTTCGTATGTCAGCAAGGGATCATCCAGCGGA 11926 Query 117272 TCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCA 117331 | ||| ||| ||| |||| | | | |||||||||||||||| || ||| Sbjct 11927 TGGAAGATGAGGCGCGTCAACGGGGACATCAGCGTGAAAATGTAACGAGCACTGGCACTG 11986 Query 117332 TCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTG 117391 |||||||| || ||||| |||||||| || || | |||||||| | ||| | |||| Sbjct 11987 TCCTTGCCGCCGTTCAGACGAGTACCGAACTGACCGCGCGGCTCCAGCAAGTTGATGTTG 12046 Query 117392 TTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCA 117451 || | ||||||| |||| || ||||| || ||||| || ||| ||| | |||| || Sbjct 12047 TTCGAGCCCACATAGTTCTGGGCCAAATTCACAATGGTCATTTGCAGGGACACCTCGCCG 12106 Query 117452 TGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGAC 117511 || || || || | | || ||||| | || | || ||| |||||||||| || | Sbjct 12107 TGATGGTAGGCGGACATTTCGGCCACCGAACCGGACAACTGGGCCACCTTCACCTCGCGC 12166 Query 117512 GTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCC 117571 | ||| ||||| ||| | | ||||||||||| || | ||||| | || ||| Sbjct 12167 TTGTCGTTGCGCTTGAAGCACGTGAACATCACCTTGCGTTGGCCCGGCTTGAAGCCGTCC 12226 Query 117572 GCCACGTGAGGG-ATCGAACGC 117592 ||| | |||| ||||| ||| Sbjct 12227 ACCA-GACAGGGAATCGAGCGC 12247 Score = 114 bits (126), Expect = 1e-20 Identities = 270/403 (67%), Gaps = 20/403 (5%) Strand=Plus/Plus Query 117983 GGCCAGTACACGTGGATCATGTTCAGCACGAGCCCCTTGATATGGGAACCGTCCAGATCC 118042 ||||||| | ||| || | || | || ||||||||||| ||||| |||||| ||||| Sbjct 12698 GGCCAGTTCGTGTGTATGAAATTAATCAGCAGCCCCTTGATGTGGGAGCCGTCCTGATCC 12757 Query 118043 GCATCGGTCATGATCATCAGGCGGCCGTACCGTAA-------ATCTCT--CAGGG--AGT 118091 ||||||||| ||||| | |||||| || || || || || || || Sbjct 12758 TGATCGGTCATAATCATTACTTTGCCGTAGCGCAATGTCTTGATGTCATCCATGGTCAGG 12817 Query 118092 TATAAACCTTACCATGT--TGGAGCCCGAGGATCTTTTTAAGGTTGGAAAATTCCTCATT 118149 ||| ||| | ||| || ||||||| ||| || | ||| | |||| | || Sbjct 12818 TATTT--CTT--CTTGTACTGCAGCCCGATGATTTTACACAAATTGTTGATTTCCGCGTT 12873 Query 118150 TTCCGTCACCTGTTTTATGGTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAA 118209 || | | || || | ||||| || || || || || | ||||| |||| || || Sbjct 12874 CTCGGCAAGTTGCTTAAACGTGGCCTCGCGCACATTCAGCAGTTTACCGCGCAACGGGAA 12933 Query 118210 CACGCCAAACTTGTCACGGCCCACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGCCGA 118269 |||||| | | ||| || ||||||| || |||||||| | ||| || | ||| || || Sbjct 12934 CACGCCGTAGTAGTCGCGCCCCACAATGCCCAAGCCGGACACAGCCAGCGACTTGGCGGA 12993 Query 118270 GTCACCCTCGGTAATAATAAGAGTGCACTCGGTGCTGCGATGAGTACCGGCCCAATTAGC 118329 ||| |||||||| | ||| ||||||||| || | | || || ||| || || Sbjct 12994 GTCTCCCTCGGTGAGAATCAGAGTGCACAGGGAGGAATTCTTGGTGCCCGCCTCGTTGGC 13053 Query 118330 ATCATCCAGCTTCGGAACGCCCGTAA---TGCGCGACTTTTTG 118369 || ||||||||||| | |||| | | || ||||||| ||| Sbjct 13054 GTCCTCCAGCTTCGGTATGCCCTTGATCTTGTGCGACTTCTTG 13096 >seq9388 Length=2963 Score = 105 bits (116), Expect = 7e-18 Identities = 193/280 (69%), Gaps = 7/280 (3%) Strand=Plus/Plus Query 124494 AACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGACTGC 124553 ||||| || | ||||||||||| |||||| | || ||| |||| ||||| | | || Sbjct 447 AACTCCCGCACACTGTGCGTCTCGCCCGTGGCTATGACGTAATCGTCGGGCGTGTCCCGC 506 Query 124554 TGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCA 124613 |||| ||| | ||||||||| | || |||||| || || ||||||||||| || | | Sbjct 507 TGCAGCATCATCCACATGGCCTCCACATAGTCCATGGCATGGCCCCAGTCGCGTTTCGAA 566 Query 124614 TCCAGGTTTCCGAGCTCGATTGGCTTGGCCGTCTTGTTCCA---CTCCGCCAAACCCA-- 124668 |||| ||| || | |||| || | ||| | || |||| ||| | Sbjct 567 TCCAAGTTGCCCAATTCGAAGAACTCCAGCTGATTGAGAAAGATCTTCGCC--ACCGAAC 624 Query 124669 GTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAA 124728 | || || ||||| ||||| || | |||||| ||| ||||| || ||||||| | Sbjct 625 GGGTGATTTTGCGTGTCACGAAATTCTCACCGCGCCGCGGTGACTCATGATTGAACAATA 684 Query 124729 TGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTT 124768 |||| | || || |||||| ||||| ||| |||||||| Sbjct 685 TGCCGTTGCAGGCGAACATCTTGTACGCCTCACGGTAGTT 724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546989137926800