Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq9782 161 1e-34 seq3053 150 2e-31 >seq9782 Length=20874 Score = 161 bits (178), Expect = 1e-34 Identities = 290/424 (68%), Gaps = 0/424 (0%) Strand=Plus/Minus Query 31979 TGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACC 32038 ||| ||||||| ||||||| || ||||||||||| | | | ||| ||||| ||| Sbjct 12230 TGGTGGACGGCTTCAAGCCGGGCCAACGCAAGGTGATGTTCACGTGCTTCAAGCGCAACG 12171 Query 32039 TGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATC 32098 | | || |||||||||| ||| |||| || | ||||| || | ||||| | Sbjct 12170 ACAAGCGCGAGGTGAAGGTGGCCCAGTTGTCCGGTTCGGTGGCCGAAATGTCCGCCTACC 12111 Query 32099 ACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTG 32158 | |||||||||| ||| || || |||||||| || | || ||||||| ||| || Sbjct 12110 ATCACGGCGAGGTGTCCCTGCAAATGACCATTGTGAATTTGGCCCAGAACTATGTGGGCT 12051 Query 32159 CAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCA 32218 | || ||| | ||||| || ||||| || ||||| || || || || ||| |||| Sbjct 12050 CGAACAACATCAACTTGCTGGAGCCGCGCGGTCAGTTCGGTACTCGTCTGAACGGCGGCA 11991 Query 32219 AGGATGCTGCGAGCTCCCGTTACATCTTCACCCGTCTCGCACCTTCGACGCGCAAGATTT 32278 |||| ||| || | |||||||| ||||| | | | || | ||||||| || | Sbjct 11990 AGGACAGTGCCAGTGCTCGTTACATTTTCACGCTGATGTCCCCGTTGACGCGCCTCATCT 11931 Query 32279 TCGACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGC 32338 || | ||| ||| ||| | |||| | ||| | | || || || ||| |||| | Sbjct 11930 TCCATCCGCTGGATGATCCCTTGCTGACATACGAAGTGGACGATGGCCAGAAAATCGAAC 11871 Query 32339 CGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGGAA 32398 || | |||| |||| | | |||||| ||||||||||||| || || |||||||| | Sbjct 11870 CGCAATGGTACATTCCGATCATACCGATGGTCTTGGTGAACGGAGCCGACGGCATCGGCA 11811 Query 32399 CGGG 32402 | || Sbjct 11810 CCGG 11807 Score = 98.7 bits (108), Expect = 1e-15 Identities = 233/350 (67%), Gaps = 13/350 (4%) Strand=Plus/Minus Query 31200 gggAATTCCGAAGCTCGACGACGCCAACTGGGCCGGTACCCACAAGTCGCACGAGTGCAC 31259 ||| || |||||||| || ||||||||| ||| || ||| | || || | |||||| Sbjct 13075 GGGCATACCGAAGCTGGAGGACGCCAACGAGGCGGGCACCAAGAATTCCTCCCTGTGCAC 13016 Query 31260 GCTTATTATTACCGAGGGTGACTCGGCAAAGGCGCTTGCTATTGCTGGCTTGAGTGTTGT 31319 || ||| | |||||||| ||||| || ||| |||| ||| | | |||||| | |||| Sbjct 13015 TCTGATTCTCACCGAGGGAGACTCCGCCAAGTCGCTGGCTGTGTCCGGCTTGGGCATTGT 12956 Query 31320 GGGGCGCAATGCGTTCGGGGTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTCGTGACGC 31379 ||||||| | | ||| ||||| ||| | || || || | || || || || || || Sbjct 12955 GGGGCGCGACTACTACGGCGTGTTCCCGTTGCGCGGTAAACTGCTGAATGTGCGCGAGGC 12896 Query 31380 CTCCGTTAAACAGGTTACGGATAATGAAGAGTTTTCCAACCTGAAAAAGATCCTCGGGCT 31439 | | |||| || || | || || | || | ||| || || ||| ||||||| Sbjct 12895 CACGTTTAAGCAACTTGCCGAGAACGCGGAAATCAACAATTTGTGTAAAATCATCGGGCT 12836 Query 31440 TCAGCATGGCAAGGTATATAATTCAC------TGA----GAGA-ATTGCGGTACGGTCGC 31488 ||| | ||| | ||| | || ||| ||| |||||| ||||| Sbjct 12835 GCAGTACAAGAAG--AAATACCTGACCATGGATGACATCAAGACATTGCGCTACGGCAAA 12778 Query 31489 CTCATGATTATGACCGACGCAGATCTCGACGGCAGTCACATCAAGGGTCT 31538 | |||||||||||||| |||| |||||| ||||||||||| || Sbjct 12777 GTAATGATTATGACCGATCAGGATCAGGACGGCTCCCACATCAAGGGGCT 12728 >seq3053 Length=25279 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| || || || || || ||||| || || | ||||| || | Sbjct 9962 AATGCAGATCTTTGTAAAAACCCTCACGGGGAAGACCATCACCTTAGAGGTCGAACCTTC 10021 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | ||| |||| || || ||||||||||| ||||||||||||||||| || Sbjct 10022 GGACACAATCGAGAATGTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCTCCAGATCA 10081 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||||||||||||||||| |||||| | || |||| ||||| | | || ||||| Sbjct 10082 ACAACGTCTAATTTTTGCTGGAAAGCAATTAGAAGATGGACGTACATTGTCCGATTATAA 10141 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| || || | ||||| || | |||||||| ||||| Sbjct 10142 CATTCAAAAGGAGTCAACATTACATCTGGTTCTTCGTCTTCGTGGTGG 10189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570073963565920