Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq3053 96.9 2e-15 >seq3053 Length=25279 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||| ||| | || ||||||||||||||||||||| || Sbjct 10189 CCACCACGAAGACGAAGAACCAGATGTAATGTTGACTCCTTTTGAATGTTATAATCGGAC 10130 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | ||||| | ||| || || ||||| |||| ||| ||||| || || || Sbjct 10129 AATGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAATTAGACGTTGTTGATCTGGAGGA 10070 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||| ||||| ||| || | ||| || | |||||||| || || Sbjct 10069 ATTCCCTCTTTGTC-CTGAATCTTGGCTTTCACATTCTCGATTGTGTCCGAAGGTTCGAC 10011 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || | ||| || || || || || | ||||| ||||| |||||||| ||| Sbjct 10010 CTCTAAGGTGATGGTCTTCCCCGTGAGGGTTTTTACAAAGATCTGCATTTTG 9959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314602382951678