Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq3053 149 5e-31 seq5502 100 2e-16 >seq3053 Length=25279 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||||||||| || || || ||| | || || | || || ||||| || Sbjct 9963 ATGCAGATCTTTGTAAAAACCCTCACGGGGAAGACCATCACCTTAGAGGTCGAACCTTCG 10022 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || ||| || ||||| |||||||| || || || || |||||| Sbjct 10023 GACACAATCGAGAATGTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCTCCAGATCAA 10082 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| |||| | || || || ||||| ||||| | || | |||||||| ||| Sbjct 10083 CAACGTCTAATTTTTGCTGGAAAGCAATTAGAAGATGGACGTACATTGTCCGATTATAAC 10142 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||||||||| || |||||| ||||| | ||| | || ||||| Sbjct 10143 ATTCAAAAGGAGTCAACATTACATCTGGTTCTTCGTCTTCGTGGTGG 10189 >seq5502 Length=7310 Score = 100 bits (110), Expect = 2e-16 Identities = 131/181 (72%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 135474 TGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGCA 135533 |||||||||| || ||| |||||| ||| || |||||||||||||| || |||| | Sbjct 5889 TGTGGAACGCCGCGCAATTGCAGCTGGTGCGCGAGGGCAAAATGCACGGCTTCCTGCGTA 5948 Query 135534 TGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCT--ACAACA 135591 |||| ||||| || || ||| | |||||| ||| ||||| | | ||||| | || Sbjct 5949 TGTACTGGGCGAAGAAAATACTCGAATGGACTGAGTCGCCGGAGCAAGCGCTGGANAATT 6008 Query 135592 CGCAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGG 135651 ||| || | | ||||| | | |||||| ||||| ||||| | || ||||| || || Sbjct 6009 CGCCATCCTCCTCAATGACAAGTTCAGTTTGGATGGCCGCGACCCCAACGGCTATGTGGG 6068 Query 135652 T 135652 | Sbjct 6069 T 6069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434738093704320