Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_028656.1 Length=65955 Score E Sequences producing significant alignments: (Bits) Value seq12086 183 1e-41 seq26203 129 2e-25 seq6146 107 8e-19 >seq12086 Length=38917 Score = 183 bits (202), Expect = 1e-41 Identities = 400/597 (67%), Gaps = 9/597 (2%) Strand=Plus/Plus Query 22937 ATCCGTCGTGAGTTTCCTGACAACATCGATCTGCTGATCATCGATGAAGCACACATGAAG 22996 || ||||| ||||||||||||||||| ||| | || |||||||| || || || | Sbjct 7423 ATTCGTCGGGAGTTTCCTGACAACATTGATTTACTCATCATCGACGAGGCCCATTTA--- 7479 Query 22997 CGTCGTGCGT---TACTTGAGGTTATCCGGGACAGAGACATCAGGGTTCTTGGACTTTCC 23053 || ||| | |||| || || || || || | |||| | | || | || | || Sbjct 7480 CGCCGTAAGAAAATACTCGAAGTCATTCGTGATACAGACCTAAAAGTAATCGGGTTATCT 7539 Query 23054 GGCACCCCGTTCGCAGCCTGGATGGGGAAGTACTACGAATGCCTGCTCAAGCCTACAACG 23113 || || || || | | | | || |||| |||||| | ||| |||| || || ||| Sbjct 7540 GGAACACCTTTTTCCCCGTTTCTTGGTGAGTATTACGAAAGGCTGATCAAACCAACCACG 7599 Query 23114 ATTCGTGAACTTATTCAGCGTGGTGATCTGAGCGATTACGAGTTTTTTGCCCCCTCAATG 23173 || || |||||||||||||| ||||| || | ||||| |||| || || ||| | Sbjct 7600 ATGAAGGAGCTTATTCAGCGTGGGGATCTAAGTAAATACGAATTTTACGCACCGACAAAG 7659 Query 23174 CCTGATCTGGCTGGCGTAAAAAC---CAGTAACACCGTATTTGGACGGGATTACAACGAG 23230 || ||| | | || ||| | | ||| | | ||| || | ||||| || ||| Sbjct 7660 CCGGATTTATCAAAAGTGAAATCAGTCCGTAGCGAGGAATTCGGTAGTGATTATAAAGAG 7719 Query 23231 GAGCAGCTCGCATCCATCATGGGGAGTTCGGATCTGGTTGGCGATATCGTTCGCAACTGG 23290 | || |||| || ||| || ||||||||||||||||| | || |||||| Sbjct 7720 GCTGAGATCGCTGAAATTATGTCAGGTGCGGATCTGGTTGGCGATGTGGTCGATAACTGG 7779 Query 23291 CTTGAGAATGGCGAGGATTTGCCGACGATCTGCTTCTGCGTGAATGTTGCGCATGCGAAT 23350 || | ||||| || | | || || ||||| || ||||| | ||| ||||| ||| Sbjct 7780 CTGGCTAATGGTGAAAACCTACCAACCATCTGTTTTTGCGTCACTGTCAGCCATGCAAAT 7839 Query 23351 TTTGTTACCCGTGAGTTTTTACAGGCCGGTATTGGTGCAGAGGTGATGACGGCAGATACC 23410 | ||| ||| || ||| | | || | ||| || || || || || ||||| Sbjct 7840 TATGTCACCGTTGCTTTTAATCGCTCAGGGGTAAATGCGGAAGTCATTACAGCTGATACA 7899 Query 23411 CTCCATGATGAACGACAGGACATCATTCGCCGTTTTGAAGAGGGCGCGACCAAAATAATT 23470 | |||||||| || | | |||||||| |||||| ||| |||| || ||||| || ||| Sbjct 7900 CCACATGATGAGCGTCGAGTCATCATTCACCGTTTCGAACAGGGTGCAACCAAGATCATT 7959 Query 23471 GTCAACGTTGGTGTACTGGTTGCGGGATTTGACAGCGATGTTCGCTGCCTGATCTAC 23527 || || ||||| || || ||||| ||||| || |||||||| ||| | || ||| Sbjct 7960 GTTAATGTTGGAACGCTTGTAGCGGGTTTTGATAGTGATGTTCGTTGCATCATTTAC 8016 >seq26203 Length=5303 Score = 129 bits (142), Expect = 2e-25 Identities = 76/79 (96%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 1320 TGGTGTCCCCTGCAGGAATCGAACCTGCAATTAGCCCTTAGGAGGGGCTCGTTATATCCA 1379 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 3176 TGGTGTCCCCTGCAGGAATCGAACCTGCAACTAGCCCTTAGGAGGGGCTCGTTATATCCA 3117 Query 1380 TTTAACTAAGAGGACATTG 1398 |||||||||| |||| ||| Sbjct 3116 TTTAACTAAGGGGACTTTG 3098 >seq6146 Length=11763 Score = 107 bits (118), Expect = 8e-19 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 2595 TTATCTGGGGAAGGAATTATGCCCCACGTCACTGAAAAAATGCTGGGGCATGAACTTGGG 2654 ||||||| ||||| | || || || | ||| |||||||| ||||||||| | | Sbjct 9568 TTATCTGAAGAAGGGGTAGCCCCGCATGTAATTGAGAAAATGCTAGGGCATGAAATGGCT 9509 Query 2655 GGAGTTATGGCCGTGTATAATAAACACGACTGGTTGTCGGAACAGAAAGATGCGTATGAG 2714 ||| | ||||| ||||||||||||||||||||| | ||||| ||||||||||| || Sbjct 9508 GGAATCATGGCTGTGTATAATAAACACGACTGGATTAGTGAACAAAAAGATGCGTACGAA 9449 Query 2715 TTGTATGCTGATAAAATTTTCTGGCAC 2741 | |||| |||||| | ||||||||| Sbjct 9448 ATACATGCAGATAAATTATTCTGGCAC 9422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 210845939367816