Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_028660.1 Length=61035 Score E Sequences producing significant alignments: (Bits) Value seq12086 197 5e-46 >seq12086 Length=38917 Score = 197 bits (218), Expect = 5e-46 Identities = 403/597 (68%), Gaps = 9/597 (2%) Strand=Plus/Minus Query 13953 GTAGATCAGGCAGCGAACATCGCTGTCAAATCCCGCAACCAGTACGCCAACGTTGACAAT 14012 ||| || | ||| |||||||| || ||||| ||||| || || ||||| || ||||| Sbjct 8016 GTAAATGATGCAACGAACATCACTATCAAAACCCGCTACAAGCGTTCCAACATTAACAAT 7957 Query 14013 TATTTTGGTCGCACCCTCTTCAAAACGGCGAATGATGTCCTGTCGTTCATCATGGGGGGT 14072 || ||||| ||||||| ||| |||||| |||||||| | | || |||||||| || || Sbjct 7956 GATCTTGGTTGCACCCTGTTCGAAACGGTGAATGATGACTCGACGCTCATCATGTGGTGT 7897 Query 14073 ATCTGCCGTCATCACCTCTGCGCCAATGCCAGACTGTAAAAACTCACGGGTAACAAAGTT 14132 ||| || || || || || || | || || | ||| || ||| ||| | || Sbjct 7896 ATCAGCTGTAATGACTTCCGCATTTACCCCTGAGCGATTAAAAGCAACGGTGACATAATT 7837 Query 14133 CGCATGAGCCACATTCACGCAGAAGCAGATCGTCGGTAAATCCTCGCCATTCTCAAGCCA 14192 ||||| ||| | ||||| || ||||| || |||| | || ||||| | ||||| Sbjct 7836 TGCATGGCTGACAGTGACGCAAAAACAGATGGTTGGTAGGTTTTCACCATTAGCCAGCCA 7777 Query 14193 GTTGCTGACGATATCGCCAACCAGATCCGAACTCCCCATGATGGATGCGAGCTGTTCCTC 14252 ||| ||| | ||||||||||||||||| || ||| || |||| || |||| Sbjct 7776 GTTATCGACCACATCGCCAACCAGATCCGCACCTGACATAATTTCAGCGATCTCAGCCTC 7717 Query 14253 GTTGTAATCCCGTCCAAATACGGTGTTACTG---GTTTTTACGCCAGCCAGATCAGGCAT 14309 || ||||| | || ||| | | ||| | | ||| || | | ||| ||| | Sbjct 7716 TTTATAATCACTACCGAATTCCTCGCTACGGACTGATTTCACTTTTGATAAATCCGGCTT 7657 Query 14310 TGAGGGGGCAAAAAACTCATAATCGCTCAGATCACCACGCTGAATAAGTTCACGAATCGT 14369 || || || |||| || || | || ||||| |||||||||||||| || ||||| Sbjct 7656 TGTCGGTGCGTAAAATTCGTATTTACTTAGATCCCCACGCTGAATAAGCTCCTTCATCGT 7597 Query 14370 TGTAGGCTTGATCAGGCATTCGTAGTACTTCCCCATCCAGGCTGCGAACGGGGTGCCGGA 14429 || || |||||||| | |||||| |||| || | | | | || || || || || Sbjct 7596 GGTTGGTTTGATCAGCCTTTCGTAATACTCACCAAGAAACGGGGAAAAAGGTGTTCCAGA 7537 Query 14430 AAGCCCAAGAACCCTGATATCTTTGTCCCGGATAACCTCAAGTA---ACGCACGACGCTT 14486 | ||| | || | | ||| | || || || || || |||| | ||| || Sbjct 7536 TAACCCGATTACTTTTAGGTCTGTATCACGAATGACTTCGAGTATTTTCTTACGGCG--- 7480 Query 14487 CATGTGTGCTTCATCGATGATCAGCAGATCGATGTTGTCAGGAAACTCACGACGGAT 14543 | || || || |||||||| || | ||| ||||||||||||||||| ||||| || Sbjct 7479 TAAATGGGCCTCGTCGATGATGAGTAAATCAATGTTGTCAGGAAACTCCCGACGAAT 7423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 195113524992924