Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_028672.1 Length=149732 Score E Sequences producing significant alignments: (Bits) Value seq3187 107 2e-18 >seq3187 Length=10884 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 24518 TGTAGTCGATACGGTCACGGGTCACGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTT 24577 |||| || || ||||| || | |||| ||||||||| ||||||||||| |||| || || Sbjct 5988 TGTAATCAATGCGGTCGCGAGAGACGTCAACTTCTTCAGGACGCCAGAAAAACGACAATT 6047 Query 24578 GCTTCTCGATCAGCTTCTCGAACTTGGCGTGTTTCTGCTGGTCATAGCGAGAAACGTTCG 24637 |||| ||||||||||| ||||| | | || || ||||| |||||||| | ||||| Sbjct 6048 GCTTTTCGATCAGCTTTTCGAAAATAGGGTACTTTTGCTGATCATAGCGTGCCACGTTAA 6107 Query 24638 GTGTCTCGCCGAGGAACATCGGCT 24661 | | ||||| |||||||||| Sbjct 6108 CAGGTTGGCCGAAAAACATCGGCT 6131 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23989 TTCAGCATATACTGAGTTCCGGACAAATGCAAGGCTTCATCACGAGCAATCAGTTCAATA 24048 |||| ||||| ||||| || | || || || ||||||||||| |||||||| | ||| Sbjct 5369 TTCAACATATGTTGAGTGCCTGTTAAGTGTAAAGCTTCATCACGTGCAATCAGCTTGATA 5428 Query 24049 ATGTTGGTGTTACCCAGCATTACGCCGCGCTCACCGAAAGCGAAGGAGCAGGCGAAGCTC 24108 || || | ||||| ||||| | || || |||| ||||| || ||||| ||||| Sbjct 5429 ATTTTAGCATTACCTTCCATTAGCTCACGTTCTGCGAATGCGAATGAACAGGCAAAGCTG 5488 Query 24109 ACGTAGAAACGGATCGCTTCCAGTGCATT 24137 || || || ||||| ||||||||||| || Sbjct 5489 ACATAAAATCGGATTGCTTCCAGTGCGTT 5517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478815812605120