Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_028683.1 Length=177643 Score E Sequences producing significant alignments: (Bits) Value seq3187 109 6e-19 >seq3187 Length=10884 Score = 109 bits (120), Expect = 6e-19 Identities = 184/265 (69%), Gaps = 5/265 (2%) Strand=Plus/Plus Query 147729 AGGGCTGAATAATGTGATGTAGTCATTCTTAATAAGACGTTCTAACATCAGGTCATTAAT 147788 ||||||||||| ||||||| | |||||||| | |||||| | || Sbjct 7467 AGGGCTGAATAGGGTGATGTCTTGGTTCTTAATCAAACGTTCGTANNNNNNNNNNN--AT 7524 Query 147789 CTGGACGCCATAATCTAAGTGACGAATACGGTTCTCGTCTACACCTTTATTGTTTTTCAG 147848 || || || || || | || |||| ||||| | || || || ||||||||||| Sbjct 7525 -TGCACACCGTAGTCCATATGGCGAACTCGGTTACCTTCAACCCCGCGGTTGTTTTTCAG 7583 Query 147849 AACGAGAAGGTTTTCGACTTCTAAATGCCAAATTGGATAGTACAATGTTGCTGCACCACC 147908 || | ||| |||| ||||| | ||||||||||| || | || || || |||||||| Sbjct 7584 GACTAACAGGCTTTCAACTTCAAGGTGCCAAATTGGGTAAAATAAGGTAGCAGCACCACC 7643 Query 147909 ACGTACACCACCTTGGGAACATGATTTAACAGAAG-CTTGAATAGTTTTCCAGAATGGAA 147967 ||| ||||||||||| || || |||||||| | || || ||| | || |||| |||| Sbjct 7644 ACGGACACCACCTTGAGAGCAAGATTTAACCGCAGTCTGGAAGTG-CTTGTAGAACGGAA 7702 Query 147968 TCACGCCTGTGTGCTTAACTTCACC 147992 | ||||||||| | ||||||| Sbjct 7703 TACAGCCTGTGTGGAAAGCTTCACC 7727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568093984756080