Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_028685.1 Length=62851 Score E Sequences producing significant alignments: (Bits) Value seq12086 192 2e-44 >seq12086 Length=38917 Score = 192 bits (212), Expect = 2e-44 Identities = 407/602 (68%), Gaps = 19/602 (3%) Strand=Plus/Plus Query 21218 ATCCGTCGTGAGTTTCCTGACAACATCGATCTGCTGATCATCGATGAAGCACACATGAAG 21277 || ||||| ||||||||||||||||| ||| | || |||||||| || || || | Sbjct 7423 ATTCGTCGGGAGTTTCCTGACAACATTGATTTACTCATCATCGACGAGGCCCATTTA--- 7479 Query 21278 CGTCGTGCGT---TACTTGAGGTTATCCGGGACAGAGACATCAGGGTTCTTGGACTTTCC 21334 || ||| | |||| || || || || || | |||| | | || | || | || Sbjct 7480 CGCCGTAAGAAAATACTCGAAGTCATTCGTGATACAGACCTAAAAGTAATCGGGTTATCT 7539 Query 21335 GGCACCCCGTTCGCAGCCTGGATGGGGAAGTACTACGAATGCCTGATCAAGCCTACAACG 21394 || || || || | | | | || |||| |||||| | |||||||| || || ||| Sbjct 7540 GGAACACCTTTTTCCCCGTTTCTTGGTGAGTATTACGAAAGGCTGATCAAACCAACCACG 7599 Query 21395 ATTCGTGAACTTATTCAGCGTGGTGATCTGAGCGATTACGAGTTTTTTGCCCCCTCAATG 21454 || || |||||||||||||| ||||| || | ||||| |||| || || ||| | Sbjct 7600 ATGAAGGAGCTTATTCAGCGTGGGGATCTAAGTAAATACGAATTTTACGCACCGACAAAG 7659 Query 21455 CCTGATCTGGCTGGCGTAAAAAC---CAGTAACACCGTATTTGGACGGGATTACAACGAG 21511 || ||| | | || ||| | | ||| | | ||| || | ||||| || ||| Sbjct 7660 CCGGATTTATCAAAAGTGAAATCAGTCCGTAGCGAGGAATTCGGTAGTGATTATAAAGAG 7719 Query 21512 GAGCAGCTCGCATCCATCATGGGGAGTTCGGATCTGGTTGGCGATATCGTTCGCAACTGG 21571 | || |||| || ||| || ||||||||||||||||| | || |||||| Sbjct 7720 GCTGAGATCGCTGAAATTATGTCAGGTGCGGATCTGGTTGGCGATGTGGTCGATAACTGG 7779 Query 21572 CTTGAGAATGGCGAGGATTTGCCGACGATCTGCTTTTGCGTGAATGTTGCGCATGCGAAT 21631 || | ||||| || | | || || ||||| |||||||| | ||| ||||| ||| Sbjct 7780 CTGGCTAATGGTGAAAACCTACCAACCATCTGTTTTTGCGTCACTGTCAGCCATGCAAAT 7839 Query 21632 TTTGTTACCCGTGAGTTTTTA-----CAGGCCGGTATTGGCGCAGAGGTGATGACGGCAG 21686 | ||| | |||| |||| | |||| |||| ||| || || || || || | Sbjct 7840 TATGTCA-CCGTTGCTTTTAATCGCTCAGG--GGTAAATGCG--GAAGTCATTACAGCTG 7894 Query 21687 ATACCCTCCATGATGAACGACAGGACATCATTCGCCGTTTTGAAGAGGGCGCGACCAAAA 21746 |||| | |||||||| || | | |||||||| |||||| ||| |||| || ||||| | Sbjct 7895 ATACACCACATGATGAGCGTCGAGTCATCATTCACCGTTTCGAACAGGGTGCAACCAAGA 7954 Query 21747 TAATTGTCAACGTTGGTGTACTGGTTGCGGGATTTGACAGCGATGTTCGCTGCCTGATCT 21806 | ||||| || ||||| || || ||||| ||||| || |||||||| ||| | || | Sbjct 7955 TCATTGTTAATGTTGGAACGCTTGTAGCGGGTTTTGATAGTGATGTTCGTTGCATCATTT 8014 Query 21807 AC 21808 || Sbjct 8015 AC 8016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200917154311112