Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_028686.1 Length=166313 Score E Sequences producing significant alignments: (Bits) Value seq3187 125 8e-24 seq27670 95.1 1e-14 >seq3187 Length=10884 Score = 125 bits (138), Expect = 8e-24 Identities = 171/240 (71%), Gaps = 3/240 (1%) Strand=Plus/Plus Query 128589 GGACTGAACAATGTGATGTAATCATTCTTAATCAAACGTTCAATCATCAGGTTATTAATC 128648 || ||||| | ||||||| | ||||||||||||||||| | || Sbjct 7468 GGGCTGAATAGGGTGATGTCTTGGTTCTTAATCAAACGTTCGT--ANNNNNNNNNNNAT- 7524 Query 128649 TGAACACCATAATCTAAATGACGAATACGGTTTTCATCTACACCTTTGTTGTTCTTAAGT 128708 || ||||| || || | ||| |||| ||||| | || || || |||||| || || Sbjct 7525 TGCACACCGTAGTCCATATGGCGAACTCGGTTACCTTCAACCCCGCGGTTGTTTTTCAGG 7584 Query 128709 ACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAGTGTCGCCGCGCCACCA 128768 || | ||| |||||||||| | |||||| ||||| || | | || || || |||||| Sbjct 7585 ACTAACAGGCTTTCAACTTCAAGGTGCCAAATTGGGTAAAATAAGGTAGCAGCACCACCA 7644 Query 128769 CGGACTCCGCCTTGGGAGCAGGATTTAACTGCTGTTTGGAAGTGCTTCCAGAAAGGAATA 128828 ||||| || ||||| ||||| |||||||| || || ||||||||||| |||| |||||| Sbjct 7645 CGGACACCACCTTGAGAGCAAGATTTAACCGCAGTCTGGAAGTGCTTGTAGAACGGAATA 7704 >seq27670 Length=3875 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 48815 TGTGAAAGTACGAGCGATAACGTCGCGCTGCTGTTCCGACGTCAGGGAGTTGAAGCGTAC 48874 |||||||||||||| |||||||| |||| ||||| ||||| ||||| || || || Sbjct 1472 TGTGAAAGTACGAGTAATAACGTCTTGCTGTTGTTCTTTAGTCAGTGAGTTAAAACGCAC 1531 Query 48875 CGCGTAGCCGGAAACACGAATGGTCAGCTGCGGATATTTTTCCGGATGCTCAACCGCGTC 48934 || || || || ||||| || |||||||| |||||||| || || | || | ||| || Sbjct 1532 TGCATAACCTGATACACGGATAGTCAGCTGTGGATATTTCTCTGGGTTTTCCATCGCTTC 1591 Query 48935 CAGCAGAGTTTCACG 48949 | ||| ||||||| Sbjct 1592 TAACAGCATTTCACG 1606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531853015587280